Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3841
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   5.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.0  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   9.3  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = +2

Query: 419 TNGTLFDQAKFACDWWDNVDW 481
           +N  +F   K    +W  VDW
Sbjct: 559 SNSAVFTNYKLYWRYWQGVDW 579


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 467 PTSRRRTWPGQTEFR 423
           P S  R WPG ++ R
Sbjct: 913 PRSPGRAWPGDSDIR 927


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 589 YCTLLVVPGEFLVSVSARRVFFQWISV 509
           Y T + +PG  LV+ S    + +W +V
Sbjct: 303 YFTTVFIPGIILVTSSFITFWLEWNAV 329


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 589 YCTLLVVPGEFLVSVSARRVFFQWISV 509
           Y T + +PG  LV+ S    + +W +V
Sbjct: 272 YFTTVFIPGIILVTSSFITFWLEWNAV 298


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 589 YCTLLVVPGEFLVSVSARRVFFQWISV 509
           Y T + +PG  LV+ S    + +W +V
Sbjct: 323 YFTTVFIPGIILVTSSFITFWLEWNAV 349


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 589 YCTLLVVPGEFLVSVSARRVFFQWISV 509
           Y T + +PG  LV+ S    + +W +V
Sbjct: 272 YFTTVFIPGIILVTSSFITFWLEWNAV 298


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,693
Number of Sequences: 438
Number of extensions: 3802
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)