Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3837
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    29   0.48 
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    25   6.0  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   6.0  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   6.0  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   6.0  

>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +2

Query: 452 LFSKRFSFSLVLFGTKSLIRIFGKKANIKSGTWK 553
           +FSK F+FSL L  + S + +   +A IK+G W+
Sbjct: 521 IFSKLFNFSLDLIKSSSKLDLLAAQAQIKTG-WR 553


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 115 LWTFANNSRIKLAKSVQPFSSFNETNEQQF-IFIYIDYLIVTFCSRT 252
           +WT  ++ RIK+  +VQ  +  N   +Q F +  Y++      C+RT
Sbjct: 107 IWTEPHSRRIKVKLTVQKEAFTNTILQQSFQVEFYVNNTQCPDCART 153


>SPAC26A3.09c |rga2||GTPase activating protein
            Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -3

Query: 89   KISELN-KNNNFVFPMILCPPSDVFLMFVL 3
            K++++N +N   VF   L  PSD+F+M +L
Sbjct: 1211 KVNKMNIRNVCIVFSPTLNIPSDIFMMLIL 1240


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
 Frame = +3

Query: 372 PVTRSACIIMASRL---HDFN--YKKLTTNVNYFLK 464
           PV   +C   A R+   +D N  +KK+T ++NY LK
Sbjct: 244 PVIEDSCFYTALRMSLYYDSNELFKKMTDDLNYVLK 279


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 15  KEYVRRGTQYHRENKIVIFI*FRYFHIYLPFNPSMDFRK 131
           K+Y +    Y R+   V+ + ++YF  Y+P N   D  +
Sbjct: 629 KDYEKIYKDYGRKGSRVLALGYKYFKNYIPENQVSDLSR 667


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,133,013
Number of Sequences: 5004
Number of extensions: 37264
Number of successful extensions: 78
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)