Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3837
         (574 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334...    33   0.16 
10_03_0010 + 7007694-7007888,7007994-7008059,7008161-7008334,700...    31   0.65 
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390...    28   4.6  

>09_04_0594 - 18831011-18831360,18831562-18832111,18832364-18833406,
            18833496-18833760,18835194-18835340,18835431-18835511,
            18835626-18835804,18835935-18836093,18836269-18836398,
            18836935-18837094,18837337-18837419,18837865-18837915,
            18838035-18838151,18838273-18838359
          Length = 1133

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 85   IFIFIYLLTLLWTFANNSRIKLAKSVQPFSS 177
            I + + L+ ++WTF+N S +KL+K +  F S
Sbjct: 1102 ISLMVLLVAIMWTFSNGSAVKLSKGLWKFPS 1132


>10_03_0010 +
           7007694-7007888,7007994-7008059,7008161-7008334,
           7009232-7009306,7009384-7009510,7012280-7012371,
           7012496-7012566,7012683-7012792,7013016-7013053,
           7013825-7013960,7014382-7014456,7014574-7014697,
           7014917-7015013,7015426-7015451,7016180-7016255,
           7016499-7016636,7016735-7016872
          Length = 585

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
 Frame = -3

Query: 245 EQNVTIK*SIYIKMNCCSLVSLKLENGWTDLAN--FILELFAKVHRRVKR-*INMKISEL 75
           E+ V    S+  K   C L SL LE+GW  L    ++L  FA    R  +  +N+++ +L
Sbjct: 91  EEEVVCSGSLVAKAVECDLRSLMLEHGWRCLGESVYVLSTFADTKERTDQCTVNVEV-KL 149

Query: 74  NKNNNFVF 51
            +N++  F
Sbjct: 150 GRNDDIEF 157


>03_01_0520 -
           3900387-3900613,3900812-3900853,3902092-3902210,
           3903633-3903712,3903829-3903856,3904151-3904272,
           3904714-3904857,3904897-3906327
          Length = 730

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +1

Query: 52  KTKLLFLFNSDIFIFIYLLTLLWTFANNSRIKLAKSVQPFSSFNETNEQQFIFIYIDYLI 231
           + K L   N D+F FI+ L          +  L K +Q       T+E  ++ IY+ +LI
Sbjct: 458 REKFLQYTNRDLFEFIFHLLRKDLSLEQKQSALEKGMQGEQRLPFTSEDLYVAIYLRHLI 517

Query: 232 V 234
           V
Sbjct: 518 V 518


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,195,173
Number of Sequences: 37544
Number of extensions: 188861
Number of successful extensions: 307
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)