Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3837
(574 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68159-10|CAD30432.1| 826|Caenorhabditis elegans Hypothetical p... 28 5.4
Z68159-9|CAA92282.2| 844|Caenorhabditis elegans Hypothetical pr... 28 5.4
AF339059-1|AAL50361.1| 826|Caenorhabditis elegans Rho guanine n... 28 5.4
AF326352-1|AAL50355.1| 844|Caenorhabditis elegans putative Rho ... 28 5.4
AB060647-1|BAB43906.1| 826|Caenorhabditis elegans putative GDP-... 28 5.4
Z71259-7|CAA95793.1| 423|Caenorhabditis elegans Hypothetical pr... 27 7.2
U59210-1|AAB09669.1| 423|Caenorhabditis elegans EAT-5 protein. 27 7.2
Z82276-7|CAB05247.2| 195|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical pr... 27 9.5
U55018-1|AAB40386.1| 195|Caenorhabditis elegans CeRac2 protein. 27 9.5
>Z68159-10|CAD30432.1| 826|Caenorhabditis elegans Hypothetical
protein C33D9.1b protein.
Length = 826
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 157 SVQPFSSFNETNEQQFIFIYIDYLIV 234
SVQ SS E E++FIF++ D +I+
Sbjct: 515 SVQKISSTTEKTEERFIFLFNDLVIL 540
>Z68159-9|CAA92282.2| 844|Caenorhabditis elegans Hypothetical
protein C33D9.1a protein.
Length = 844
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 157 SVQPFSSFNETNEQQFIFIYIDYLIV 234
SVQ SS E E++FIF++ D +I+
Sbjct: 515 SVQKISSTTEKTEERFIFLFNDLVIL 540
>AF339059-1|AAL50361.1| 826|Caenorhabditis elegans Rho guanine
nucleotide exchangefactor FGD-1 protein.
Length = 826
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 157 SVQPFSSFNETNEQQFIFIYIDYLIV 234
SVQ SS E E++FIF++ D +I+
Sbjct: 515 SVQKISSTTEKTEERFIFLFNDLVIL 540
>AF326352-1|AAL50355.1| 844|Caenorhabditis elegans putative Rho
guanine nucleotideexchange factor FGD-1 protein.
Length = 844
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 157 SVQPFSSFNETNEQQFIFIYIDYLIV 234
SVQ SS E E++FIF++ D +I+
Sbjct: 515 SVQKISSTTEKTEERFIFLFNDLVIL 540
>AB060647-1|BAB43906.1| 826|Caenorhabditis elegans putative GDP-GTP
exchange factor protein.
Length = 826
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 157 SVQPFSSFNETNEQQFIFIYIDYLIV 234
SVQ SS E E++FIF++ D +I+
Sbjct: 515 SVQKISSTTEKTEERFIFLFNDLVIL 540
>Z71259-7|CAA95793.1| 423|Caenorhabditis elegans Hypothetical
protein F13G3.8 protein.
Length = 423
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 157 SVQPFSSFNETNEQQFIFIYIDYLIVTF 240
S+Q + N NE+ F+F+YI +L+V F
Sbjct: 263 SIQCVLTLNMFNEKIFLFLYIWFLLVFF 290
>U59210-1|AAB09669.1| 423|Caenorhabditis elegans EAT-5 protein.
Length = 423
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 157 SVQPFSSFNETNEQQFIFIYIDYLIVTF 240
S+Q + N NE+ F+F+YI +L+V F
Sbjct: 263 SIQCVLTLNMFNEKIFLFLYIWFLLVFF 290
>Z82276-7|CAB05247.2| 195|Caenorhabditis elegans Hypothetical
protein K03D3.10 protein.
Length = 195
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 34 GHNIIGKTKLLFLFNSDIFIFIYLLTLLWTFANN 135
G +GKT LL + ++ F Y+LT+ T++ N
Sbjct: 10 GDGAVGKTCLLLSYTTNAFPGEYILTVFDTYSTN 43
>Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical protein
B0365.7 protein.
Length = 2769
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -3
Query: 68 NNNFVFPMILCPPSDVFLMFVL 3
N++F+ P+++CPPS F F+L
Sbjct: 1644 NSDFI-PLLVCPPSQEFYEFLL 1664
>Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical protein
B0365.7 protein.
Length = 2769
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -3
Query: 68 NNNFVFPMILCPPSDVFLMFVL 3
N++F+ P+++CPPS F F+L
Sbjct: 1644 NSDFI-PLLVCPPSQEFYEFLL 1664
>U55018-1|AAB40386.1| 195|Caenorhabditis elegans CeRac2 protein.
Length = 195
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 34 GHNIIGKTKLLFLFNSDIFIFIYLLTLLWTFANN 135
G +GKT LL + ++ F Y+LT+ T++ N
Sbjct: 10 GDGAVGKTCLLLSYTTNAFPGEYILTVFDTYSTN 43
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,640,538
Number of Sequences: 27780
Number of extensions: 202559
Number of successful extensions: 461
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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