Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3836
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    32   0.076
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    27   2.9  
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual          26   6.6  

>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 32.3 bits (70), Expect = 0.076
 Identities = 18/56 (32%), Positives = 22/56 (39%)
 Frame = -3

Query: 281 HCDAGYSIQVECAAVGFQRSTSTTQMHKLLVKTVEFTITSINSMIH*ILEFTGY*D 114
           H  AG+SI   C +  F    S T   K      EFT    N     +L + GY D
Sbjct: 213 HPSAGHSIDSTCQSNSFLEGDSATHKKKKTDNIKEFTSCEFNDRSRTLLNYAGYMD 268


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +1

Query: 583 NTKKPIS---RVTDTEGGGPRPSSSPTNAVCREKKAVMIQKPEIDLST 717
           +T++P++     + T   GPRP++S +N            KP  D++T
Sbjct: 212 HTEEPVAAKPEASSTATKGPRPTTSASNTNTSPANGAPTNKPSTDINT 259


>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 309 PACRDRYPTKYRNATHGSPHR 371
           PACR  +PTK RN T   P +
Sbjct: 262 PACRFIHPTKSRNMTWRPPSK 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,144,134
Number of Sequences: 5004
Number of extensions: 67228
Number of successful extensions: 168
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)