Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3836
         (754 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-1413|AAF54724.2|  573|Drosophila melanogaster CG12213-P...    31   1.3  
AY113282-1|AAM29287.1|  358|Drosophila melanogaster AT18024p pro...    29   6.8  
AE014297-2076|AAF55220.1|  358|Drosophila melanogaster CG5614-PA...    29   6.8  

>AE014297-1413|AAF54724.2|  573|Drosophila melanogaster CG12213-PA,
           isoform A protein.
          Length = 573

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +2

Query: 230 ESPLLRILLECCSRHHSVIPTVTDNCSCVPRPVSDEIQKRNSRIASSPSSENERPYRA 403
           E P L +     S +HS+I    +N   VP+ VS++ Q+   +++  P S    P ++
Sbjct: 288 EQPQLPLQPFAVSNNHSLILNSVENFQIVPKSVSEKQQQEEPQLSGGPVSPLSAPRKS 345


>AY113282-1|AAM29287.1|  358|Drosophila melanogaster AT18024p
           protein.
          Length = 358

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +1

Query: 565 KGLRVQNTKKPISRVTDTEGGGPRPSSSPTNAVCREKKAVMIQKPEIDL 711
           +G  VQN +K I+  T T+G  P+  S+P  ++  E     +   E D+
Sbjct: 176 QGRLVQNNRKLITNNTFTKGLTPKSISTPPRSIKNENPKSYVDSSESDV 224


>AE014297-2076|AAF55220.1|  358|Drosophila melanogaster CG5614-PA
           protein.
          Length = 358

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +1

Query: 565 KGLRVQNTKKPISRVTDTEGGGPRPSSSPTNAVCREKKAVMIQKPEIDL 711
           +G  VQN +K I+  T T+G  P+  S+P  ++  E     +   E D+
Sbjct: 176 QGRLVQNNRKLITNNTFTKGLTPKSISTPPRSIKNENPKSYVDSSESDV 224


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,094,259
Number of Sequences: 53049
Number of extensions: 740529
Number of successful extensions: 2014
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2014
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3437745267
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)