Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3835
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    28   1.2  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    27   1.6  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   1.6  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   5.0  
SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    26   5.0  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   5.0  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.6  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.7  

>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -3

Query: 455  NVGK*NKATERNFSG--SSKKSTEKISVNDHHFTE 357
            N  K N+ATE NFSG  S  K  E +S N+ +  E
Sbjct: 1471 NDTKENRATESNFSGVDSMSKERENVSSNEDNSPE 1505


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 6   SDDLRMTSLFNSKNTINMIFSLIV*EMVLWGDLNDERKDL 125
           S D+R+  + N    I   F ++  E VLW D+   +K L
Sbjct: 384 SSDVRILQVVNESMPIKSEFFILTTESVLWMDIQHPQKPL 423


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -1

Query: 217  KIRLDLDLE-RS*LPGHKIDRRSTEQYHPLGGRSFLSSFKSPHNTIS 80
            +I++DLD   RS  PG   +++   ++ P+    F+ SF  P+N ++
Sbjct: 2161 EIKVDLDFALRSPNPGDIFEKKILPKFPPVFYEWFVESFPEPNNWVT 2207


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 410  SSKKSTEKISVNDHHFTEIILHPISSHLMSFH 315
            S+KKS  ++    H + E++  P+SS+L   H
Sbjct: 3368 SAKKSHAELFKVLHRYREVLRQPVSSYLSQKH 3399


>SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 355 ISVKWWSFTEIFSVDFLEDPEKLRSV 432
           + +++W+      VD+LED E+L  V
Sbjct: 107 VFIQFWNLPGELKVDYLEDQERLEKV 132


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 373  SFTEIFSVDFLEDPEKLRSVALFHFP 450
            SF  IFS  F E+PE  +S   F  P
Sbjct: 1836 SFDNIFSYIFSEEPESKKSPIWFELP 1861


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 445 NETKPLNVTSRDLLKSPLK 389
           NET PLN TS   L+ P++
Sbjct: 603 NETDPLNPTSGSFLRQPMQ 621


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -3

Query: 335 SHLMSFHFVFIS 300
           SHL+SFHF+F S
Sbjct: 174 SHLISFHFLFFS 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,368,335
Number of Sequences: 5004
Number of extensions: 45961
Number of successful extensions: 114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)