Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3833
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71259-5|CAA95796.1|  106|Caenorhabditis elegans Hypothetical pr...    83   2e-16
Z66500-5|CAA91306.1|  168|Caenorhabditis elegans Hypothetical pr...    58   4e-09
U40938-8|AAA81699.1|  123|Caenorhabditis elegans Hypothetical pr...    48   8e-06
Z11126-2|CAA77473.1|  197|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U49944-3|AAM51525.1|  341|Caenorhabditis elegans Mesodermal line...    28   6.7  

>Z71259-5|CAA95796.1|  106|Caenorhabditis elegans Hypothetical
           protein F13G3.4 protein.
          Length = 106

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 42/96 (43%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
 Frame = +3

Query: 132 DDVSKIIKEAIENSIGG-TAYQHNNVNQWTSAVVESCLGQLTKLQKPYKYVVTCTILQ-K 305
           +DV  IIK+ ++  +G  T Y H +  QW    VE    +L    KPYKYVVT + LQ  
Sbjct: 6   EDVHMIIKQVLDEVVGASTQYTHKDSVQWNQKAVEQITKKLVAAGKPYKYVVTSSFLQIS 65

Query: 306 NGAGLHTSSSCYWDNTTDGSCTVRWENKTMYCIVSV 413
           +G+GL+ S+  YW+  TD S   RWE KTM  IV V
Sbjct: 66  SGSGLNVSTISYWNKVTDSSYMYRWEAKTMLAIVYV 101


>Z66500-5|CAA91306.1|  168|Caenorhabditis elegans Hypothetical
           protein T05C12.5 protein.
          Length = 168

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
 Frame = +3

Query: 135 DVSKIIKEAIENSIGGTAYQHNNVNQWTSAVVESCLGQLTKLQKPYKYVVTCTILQK-NG 311
           ++  II+++ ++ IG T Y    ++ W S ++++    L KL    K++V CTI  K + 
Sbjct: 66  EIDLIIQKSFDSIIGKTPYSPFKMSDWMSKMIQTISDNLVKLNGSKKFLVHCTISAKTDN 125

Query: 312 AGLHTSSSCYWDNTTDGSCTVRWENKTMYCIVSV 413
             + T++ C WD T D +    W +KT++  V V
Sbjct: 126 LAICTANMCSWDTTKDTAYYSEWMSKTIFGAVQV 159


>U40938-8|AAA81699.1|  123|Caenorhabditis elegans Hypothetical
           protein D1009.5 protein.
          Length = 123

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
 Frame = +3

Query: 138 VSKIIKEAIENSIGG-TAYQHNNVNQWTSAVVESCLGQLTKLQKP-YKYVVTCTILQKNG 311
           V+ +I+E +   +G  T Y  +     +  +  S   +L  LQ P YKYV+   I ++ G
Sbjct: 24  VAGMIQEILGEKLGALTIYNVDEAELVSKDISASIRERLKGLQLPRYKYVIQTMIAEQCG 83

Query: 312 AGLHTSSSCYWDNTTDGSCTVRWENKTMYCIVSV 413
            G  T+  C WD   DG  T R+   +++C V V
Sbjct: 84  NGATTAVQCVWDEDCDGYLTQRYVTGSIWCEVLV 117


>Z11126-2|CAA77473.1|  197|Caenorhabditis elegans Hypothetical
           protein ZK643.2 protein.
          Length = 197

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -2

Query: 345 PNNKKNLYAVLHHSSAVL---CRSLHICMVFVT*STAPDMTQQLLKS 214
           P + K+LY V    +A++   C +LH C V+VT        Q L++S
Sbjct: 107 PEDNKHLYVVHAEMNAIINKRCTTLHDCTVYVTLFPCNKCAQMLIQS 153


>U49944-3|AAM51525.1|  341|Caenorhabditis elegans Mesodermal lineage
           specificationprotein 2 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +2

Query: 5   FFGFEIKQKFHFDNVPHLLLNLKQNNGSQRMQR 103
           FFG    Q  HF N+ +  +N++ +NG ++ ++
Sbjct: 124 FFGLPTAQLMHFKNMSNPDVNIQSDNGEEKDEK 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,823,800
Number of Sequences: 27780
Number of extensions: 310719
Number of successful extensions: 770
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)