Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3830
(727 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 46 4e-06
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 40 3e-04
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 36 0.006
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 32 0.096
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 31 0.13
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 29 0.51
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac... 28 1.6
SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatas... 27 2.7
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 26 4.8
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 26 6.3
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c... 25 8.3
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 25 8.3
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 46.4 bits (105), Expect = 4e-06
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Frame = +1
Query: 94 RLATF--KDWPRCMRQKPEELAEAGFFYTGQG--------DKTKCFYCDGGLKDWESDDV 243
RL TF K WPR + PE LA GF+Y D C+ C DWE DD
Sbjct: 25 RLDTFQKKKWPRA-KPTPETLATVGFYYNPISESNSEERLDNVTCYMCTKSFYDWEDDDD 83
Query: 244 PWEQHARWFDRCAYVQLVKGRD 309
P ++H C + ++ ++
Sbjct: 84 PLKEHITHSPSCPWAYILSSKN 105
Score = 45.6 bits (103), Expect = 7e-06
Identities = 27/73 (36%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Frame = +1
Query: 94 RLATFKD--WPRCMRQ----KPEELAEAGFFYTGQGDK---TKCFYCDGGLKDWESDDVP 246
R TF D WP R +P +A +GF Y D C YCD L DWE DD P
Sbjct: 120 REQTFVDKVWPYTNRPDYHCEPSVMAASGFVYNPTADAKDAAHCLYCDINLHDWEPDDDP 179
Query: 247 WEQHARWFDRCAY 285
+ +H R C +
Sbjct: 180 YTEHKRRRADCVF 192
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 40.3 bits (90), Expect = 3e-04
Identities = 25/62 (40%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Frame = +1
Query: 382 STKNVAQEGEKHLDDSKICKICYSEERNVCFVPCGHVVACAKCALS-------TDKCPMC 540
S K V ++ L D K C IC N+ PCGH+ C C LS T KCP+C
Sbjct: 190 SKKQVVPSSQR-LADYK-CVICLDSPENLSCTPCGHIF-CNFCILSALGTTAATQKCPVC 246
Query: 541 RR 546
RR
Sbjct: 247 RR 248
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 35.9 bits (79), Expect = 0.006
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 8/62 (12%)
Frame = +1
Query: 397 AQEGEKHLDDSKICKIC---YSEERNVCF-VPCGHVV--ACAKCAL--STDKCPMCRRTF 552
A+ G K+ D + C IC YSEE + +PC H+ AC L ++D CP+C+++
Sbjct: 486 AERGSKYFDQRE-CTICLCEYSEESPLYRELPCHHIFHPACIDPYLLKNSDLCPLCKQSV 544
Query: 553 TN 558
TN
Sbjct: 545 TN 546
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 31.9 bits (69), Expect = 0.096
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Frame = +1
Query: 427 SKICKICYSEERNVCFVPCGHVVACAKC----ALSTD-KCPMCRR 546
S C +C RN C PC + C +C L +D +CP C R
Sbjct: 279 SLACTLCKKLARNACRTPCCDKLFCEECIQTALLDSDFECPNCHR 323
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 31.5 bits (68), Expect = 0.13
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Frame = +1
Query: 379 DSTKNVAQ---EGEKHLDDSKICKICYSEERNVCFVPCGHVVACAKCAL------STDKC 531
D NVA E+ +D +IC IC C +PC H + C CAL T +C
Sbjct: 59 DPVSNVATVDASKEEQDEDEQICFICAEGITYSCVLPCNHRM-CHVCALRLRALYKTKEC 117
Query: 532 PMCR 543
C+
Sbjct: 118 TFCK 121
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 29.5 bits (63), Expect = 0.51
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Frame = +1
Query: 436 CKICYSEERNVCFVPCGHVVACAKCAL----STDKCPMCR 543
C+IC+ + PCGH C C + + +CP CR
Sbjct: 169 CQICFGMLYDPVVSPCGHTF-CGPCLMQALTQSPQCPTCR 207
>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
Hba1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 108 QGLAEMYAPKTRGTGRGRILL 170
QG+ ++ PK RG+G GR+L+
Sbjct: 300 QGILKVNVPKQRGSGSGRLLM 320
>SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatase
Ppe1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 27.1 bits (57), Expect = 2.7
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -1
Query: 577 RSRAAPHS*TSCDTSGTCPSTARTWRTPPRG 485
R++ PH + CD + P +W PRG
Sbjct: 179 RAQEIPHEGSFCDLMWSDPEDIESWTVSPRG 209
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 26.2 bits (55), Expect = 4.8
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 11/58 (18%)
Frame = +1
Query: 415 HLDDSKICKICYSE---ERNVCFVPCG------HVVACAKCALSTD--KCPMCRRTFT 555
H + + C ICYS ER + CG H K S++ +CP+CR +FT
Sbjct: 1551 HFEGVEECAICYSVLSVERTLPNKRCGTCRHKFHASCLYKWFKSSNSSRCPLCRSSFT 1608
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/48 (33%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Frame = +1
Query: 412 KHLDDSKICKICYSEERNVCFVPCGHVVACAKC----ALSTDKCPMCR 543
K LD S C IC+ R C H C+ C CP CR
Sbjct: 21 KGLDSSLRCLICHEYFRAPLITSCSHTF-CSFCIRDYLREHPMCPACR 67
>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 338
Score = 25.4 bits (53), Expect = 8.3
Identities = 17/59 (28%), Positives = 23/59 (38%)
Frame = +1
Query: 112 DWPRCMRQKPEELAEAGFFYTGQGDKTKCFYCDGGLKDWESDDVPWEQHARWFDRCAYV 288
D PR ++ K + F Y D C +CD GL W E A ++C V
Sbjct: 223 DIPRHIKFKGSVIPATSFIY----DFNACVFCDDGLVVWTRYVKKIEMKAVSIEQCLRV 277
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.4 bits (53), Expect = 8.3
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Frame = +1
Query: 421 DDSKICKICYSE----ERNVCFVPCGHVVACAKC--ALSTD---KCPMCRRTFT 555
+D C +C E ++N CG+ V C C + D +CP CRR +T
Sbjct: 13 EDDMCCPLCMEEIDISDKNFKPCQCGYRV-CRFCWHHIKEDLNGRCPACRRLYT 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,957,199
Number of Sequences: 5004
Number of extensions: 60032
Number of successful extensions: 197
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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