Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3830
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           23   2.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.0  

>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 312 HSEGEVGGHCD 344
           HS G+ GGHC+
Sbjct: 40  HSLGKAGGHCE 50


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/45 (24%), Positives = 18/45 (40%)
 Frame = -3

Query: 608 VYSSRGGSFHEK*SRTAFVNVLRHIGHLSVDSAHLAHATTWPHGT 474
           VYS+ G   H      + ++   H  H    + H  H+T   H +
Sbjct: 408 VYSTPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQHSTPLAHSS 452


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 584  RTLLASCILVTSPGRP*SVL 643
            +TLLAS I + SPG+  S+L
Sbjct: 1018 KTLLASQIKLVSPGQIKSLL 1037


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,610
Number of Sequences: 438
Number of extensions: 4585
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)