Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3829
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0655 - 30916396-30916578,30916689-30916748,30916916-309170...    31   0.80 
11_01_0595 + 4732330-4732723,4732839-4732903,4733023-4733143,473...    30   1.8  
08_01_0511 + 4459685-4459755,4461553-4463653,4463741-4463808,446...    28   5.6  
12_01_0718 + 6339982-6342981                                           28   7.4  
03_05_1088 + 30301654-30303480                                         28   7.4  
02_02_0173 - 7433744-7433775,7434002-7434241,7434548-7437410           28   7.4  

>01_06_0655 -
           30916396-30916578,30916689-30916748,30916916-30917032,
           30917139-30917246,30917301-30917390,30917731-30917799,
           30918086-30918178,30918292-30918384,30918540-30918621,
           30919467-30919534,30919662-30920684
          Length = 661

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
 Frame = +3

Query: 267 PEDPYDTVTGKTMCTYDFYEGQGRL--DGAFCDFTETDKMEYLES--IHKAGVVNI-EME 431
           P DPY + T + M T+  Y   G +  +  + ++   +   YL S  +  AG V +    
Sbjct: 145 PNDPYASATAEVMPTFYAYAASGSVSAEAVYANYGREEDFAYLASRGVDVAGKVAVARYG 204

Query: 432 SLSFAALTHHAGIKAAVVCVTVLDRLK 512
            +    + H+A +  A   V   D L+
Sbjct: 205 RIHCEDIVHNARVAGAAAAVVYTDPLQ 231


>11_01_0595 + 4732330-4732723,4732839-4732903,4733023-4733143,
            4733596-4733687,4733850-4733915,4734106-4734125,
            4734147-4734239,4734358-4734445,4734570-4734635,
            4734728-4734843,4735410-4735500,4736133-4736234,
            4736342-4736425,4736551-4736643,4736728-4736823,
            4736914-4736999,4737528-4737606,4737675-4737788,
            4737890-4737985,4738060-4738123,4738221-4738510,
            4738901-4738956,4739060-4739177,4739287-4739367,
            4739683-4739762,4740001-4740055,4740142-4740211,
            4740279-4740468,4740567-4740690,4741055-4741129,
            4741217-4741390
          Length = 1112

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +3

Query: 261  ADPEDPYDTVTGKTMCTYDFYEGQGRLDGAFCDFTETDKMEYLESIHKAGVVNIE 425
            ADP+ P +T     +       G   LD  F +  E D +  LE IH+ G VN++
Sbjct: 898  ADPQKPPNTWKLANLLDEFGSLGGTLLDEPFKEIQEEDLLSSLEQIHEYGPVNVD 952


>08_01_0511 +
           4459685-4459755,4461553-4463653,4463741-4463808,
           4465156-4465282,4465379-4465429
          Length = 805

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +3

Query: 153 AVDGALRNVLELTVLGKIVQRPAKLDRRLVREL 251
           A + +L+NV  LT+ G  V+ P+ LD +++R L
Sbjct: 293 ATNLSLKNVRSLTIFGYFVKTPSLLDFKVLRVL 325


>12_01_0718 + 6339982-6342981
          Length = 999

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = -1

Query: 620 DFSLHLK--IPFNVTANKLRGTLLPLIQNFFRS*NLITLQSV*NSNADDSCLNARVMSEG 447
           +FS +LK  I F  + N L G + PLI +  +S  LI L +   +    SCL    M + 
Sbjct: 605 NFSTYLKKTIIFKASKNNLSGNIPPLICDGIKSLQLIDLSNNYLTGIIPSCL----MEDA 660

Query: 446 GEREGLHLNVNN 411
              + L L  NN
Sbjct: 661 SALQVLSLKENN 672


>03_05_1088 + 30301654-30303480
          Length = 608

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 464 RVMSEGGEREGLHLNVNNAGFVDA 393
           RV  E GER+G+  N   AGF +A
Sbjct: 287 RVFDEAGERDGISWNTMVAGFANA 310


>02_02_0173 - 7433744-7433775,7434002-7434241,7434548-7437410
          Length = 1044

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = +3

Query: 318 FYEGQGRLDGAFCDFTETDKMEYLESIHK--AGVVN---IEMESLSFAALTHH 461
           F   Q +L G+  DF++   ++YL+  +   +G VN     M S+SF  L ++
Sbjct: 267 FLAAQNQLQGSIPDFSKLSALQYLDLSYNNLSGAVNPSIYNMSSISFLGLANN 319


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,528,475
Number of Sequences: 37544
Number of extensions: 313144
Number of successful extensions: 664
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)