Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3829
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13646-2|AAP68930.1|  295|Caenorhabditis elegans Hypothetical pr...   170   8e-43
AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical ...    30   1.2  
AC024880-3|AAF60915.3|  675|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z78416-1|CAB01682.1|  425|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AF293976-1|AAG17881.1|  425|Caenorhabditis elegans CAB-1 protein.      28   6.6  
Z82278-7|CAJ43451.1|  416|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>U13646-2|AAP68930.1|  295|Caenorhabditis elegans Hypothetical
           protein ZK783.2 protein.
          Length = 295

 Score =  170 bits (413), Expect = 8e-43
 Identities = 88/198 (44%), Positives = 117/198 (59%)
 Frame = +3

Query: 3   HGMGIPSVGILLHEVIKLMYHAKVRDPVFFRXXXXXXXXXXXXXXXXSDEAVDGALRNVL 182
           HGMG PS+ I+L E  KLM+HA V++P F R                S EA++  L +  
Sbjct: 95  HGMGTPSLSIMLVESFKLMHHAGVKNPTFIRLGTSGGVGVPPGTVVVSTEAMNAELGDTY 154

Query: 183 ELTVLGKIVQRPAKLDRRLVRELKALADPEDPYDTVTGKTMCTYDFYEGQGRLDGAFCDF 362
              + GK ++RP +LD  L RE       E      TGKTMC  DFYEGQ RLDG FCD+
Sbjct: 155 VQIIAGKRIERPTQLDAAL-REALCEVGKEKSIPVETGKTMCADDFYEGQMRLDGYFCDY 213

Query: 363 TETDKMEYLESIHKAGVVNIEMESLSFAALTHHAGIKAAVVCVTVLDRLKGDQVLAPKEV 542
            E DK  +L  ++  GV NIEMES  FA+ T  AG ++A+VCVT+L+R+ GDQV   KE 
Sbjct: 214 EEEDKYAFLRKLNALGVRNIEMESTCFASFTCRAGFQSAIVCVTLLNRMDGDQVQIAKEQ 273

Query: 543 LDEWQQRPTKLVCRYIKR 596
             E+++RP +LV  YI++
Sbjct: 274 YIEYEERPFRLVTAYIRK 291


>AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical
            protein T05C3.2 protein.
          Length = 1733

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = -1

Query: 473  LNARVMSEGGEREGLHLNVNNAGFVDAL*VLHLISFGE 360
            +N  ++S+G E EG H N+ +  + DAL ++ L+  GE
Sbjct: 1112 VNGNLVSQGSESEGEHNNIVHIFYRDALNMMFLLWTGE 1149


>AC024880-3|AAF60915.3|  675|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.1 protein.
          Length = 675

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/27 (48%), Positives = 21/27 (77%)
 Frame = +3

Query: 174 NVLELTVLGKIVQRPAKLDRRLVRELK 254
           N+L+L  L +I++ PAKL RRL++ L+
Sbjct: 632 NILDLDELFQIMKHPAKLSRRLLQILQ 658


>Z78416-1|CAB01682.1|  425|Caenorhabditis elegans Hypothetical
           protein C23H4.1 protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 510 KGDQVLAPKEVLDEWQQRPTKLVC 581
           KGD+ LA K  L ++QQ   K++C
Sbjct: 355 KGDETLAYKAQLHQYQQAKQKIIC 378


>AF293976-1|AAG17881.1|  425|Caenorhabditis elegans CAB-1 protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 510 KGDQVLAPKEVLDEWQQRPTKLVC 581
           KGD+ LA K  L ++QQ   K++C
Sbjct: 355 KGDETLAYKAQLHQYQQAKQKIIC 378


>Z82278-7|CAJ43451.1|  416|Caenorhabditis elegans Hypothetical
           protein M162.11 protein.
          Length = 416

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +3

Query: 282 DTVTGKTMCTYDFYEGQGRLD--GAFCDFTETDKMEYLESIHKAGVVNIEMESLS 440
           DT   K    Y+F +G   L   G FC+    D +EY E  +    + +E E L+
Sbjct: 29  DTKAIKLCILYEFLQGTPTLKAFGNFCEAIGNDVIEYREFDYWYHQIGVECEDLN 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,850,135
Number of Sequences: 27780
Number of extensions: 262994
Number of successful extensions: 596
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)