Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3827
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    27   1.8  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    25   9.5  
SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces...    25   9.5  

>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 323 ALPTPSPLFQALDPVGLQFSGIGTQSPGTVCPGTNDP 213
           A+PT S +   L  +   F   G  +PGT  PGT  P
Sbjct: 458 AVPTTSSM--PLQGMPTMFGAPGVSAPGTEAPGTGTP 492


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 526 SRLHWPEALGLRVERACYLPIGSFIGSTLVTAEQNL 419
           S  HWP  L  R+ R+C L +G    ++++   Q L
Sbjct: 223 SSTHWPMTLVERLCRSCVLIVGQRSTNSILLVYQIL 258


>SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 382

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 496 LRVERACYLPIGSFIGSTLV 437
           ++V +ACYLPI +  G+ ++
Sbjct: 311 VKVRQACYLPISNATGAPVI 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,381,322
Number of Sequences: 5004
Number of extensions: 51216
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)