Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3826
         (433 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    26   2.2  
SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi...    25   5.0  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    25   6.6  

>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +1

Query: 310 FTYKPGRLHRNRSCDPDVTTATDTEAHSRGGPVPNSPYSES 432
           F   P   H   +   D   AT+   HS+  P+P  P S+S
Sbjct: 51  FLSSPSHKHPTTASASDSDEATEIFTHSQPLPIPAGPSSKS 91


>SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -3

Query: 221 VSFYTIMIVFYTSIITNFAKATL*KNINTDNLYLFYSQFDHRCQEQKFD 75
           ++F+ I+  F   +IT FAK  L    + D +     +  HR    K D
Sbjct: 1   MNFFKILSFFSLFVITCFAKLDLNSKTDADGVIQITGRLFHRIVNGKQD 49


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1564

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 8/34 (23%), Positives = 19/34 (55%)
 Frame = -1

Query: 139  IQTIYIYSILNLTTDVKNKSLTINSMHACVRQIH 38
            +  ++  +++N T +V    + +NS+H C+   H
Sbjct: 1343 LSQLFEKAVINPTIEVYGDIVLLNSLHKCIVNSH 1376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,677,315
Number of Sequences: 5004
Number of extensions: 30180
Number of successful extensions: 58
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)