Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3826
         (433 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   1.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   3.4  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   4.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   5.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   5.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   5.9  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   5.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   7.8  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +3

Query: 159 SLGEICDYRSIKYNHNSVKT--YNSN 230
           SL   C+Y +  YN+N+ K   YN N
Sbjct: 306 SLSNSCNYSNNYYNNNNYKKLYYNIN 331


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 115 ILNLTTDVKNKSLTINS 65
           ILNL TD+ + S +I+S
Sbjct: 364 ILNLRTDISSSSSSISS 380


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 192 KYNHNSVKTYNSN 230
           KYN+N+   YN+N
Sbjct: 97  KYNYNNKYNYNNN 109


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 376 DTEAHSRGGPVPNS 417
           D +AHS+GG + N+
Sbjct: 357 DPKAHSKGGTLENT 370


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 376 DTEAHSRGGPVPNS 417
           D +AHS+GG + N+
Sbjct: 357 DPKAHSKGGTLENT 370


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 376 DTEAHSRGGPVPNS 417
           D +AHS+GG + N+
Sbjct: 295 DPKAHSKGGTLENT 308


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -2

Query: 357 RITGTIAMKSTWLVSKEQKLQTIFCQ 280
           RIT + A+K  W+  +E+    +  Q
Sbjct: 158 RITASEALKHPWICQRERVASVVHRQ 183


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 65  YACVCASNTWYVVCVI 18
           YA V +S ++YV C++
Sbjct: 192 YAVVSSSISFYVPCIV 207


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,691
Number of Sequences: 438
Number of extensions: 2340
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)