Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3824
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    27   1.8  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    27   1.8  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    27   3.1  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   4.1  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    26   4.1  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    26   5.5  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    25   7.2  

>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
 Frame = +3

Query: 213 STMPFTFSEPVASPNSAS-------TS*LGSPSHPEMGNVPGLAPTASTTFNFLRQRDQS 371
           S +P   +EP++SP+++S       TS  G P H   GN+    P+++    F     +S
Sbjct: 449 SGLPSRLTEPISSPSTSSIDVDKEGTSFPGLPYHSSKGNLYAPQPSSNVPTKFTGGASES 508

Query: 372 AEL 380
           + +
Sbjct: 509 SSV 511


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 355 DNVTSLPNLLRQNGIMTGIIGKKHVG 432
           D V +LP +L++ G  T + GK H+G
Sbjct: 102 DRVAALPEILQEAGYYTTMSGKWHLG 127


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +3

Query: 204 PGGSTMPFTFSEPVASPNSASTS*LGSPSHPEMGNVPGLAPTASTTFNFLR 356
           PG   +P T+S+  ++ N ++T   G PS+   G  P   P +    NF R
Sbjct: 446 PGTRRIP-TYSQSTSTTNPSATPTTGDPSNSTYGG-PQTFPNSGNNPNFNR 494


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 68   ITETVLSDKVRNVLLL-LADDGGFEIGAYR 154
            +T+ +L D   N  ++ + DD GF+I AYR
Sbjct: 1489 MTQRMLEDSSANAAVIAIRDDVGFKIAAYR 1518


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 241  QLLPQIRPALPNWGRRVTQKWEMYRGLHPRRP 336
            QL   IR  +P++G    ++W+ YRG +   P
Sbjct: 989  QLQDNIRKVIPSFGGLSHKEWKEYRGENETSP 1020


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +3

Query: 183 DELTRNGPGGSTMPFTFSEPVASPNSASTS*LGSPSHPEMGNVPGL-APTASTTFNFLRQ 359
           D +  N P    +P+T+S    S  S ST  + +PS   M N  GL +  A  +F   ++
Sbjct: 371 DSVLANSPTPRHLPYTWSRHSTSGPSRST--VLNPSTSRMSNYTGLESHLAQLSF---KR 425

Query: 360 RDQSAEL 380
           R  SA L
Sbjct: 426 RSNSATL 432


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
 Frame = -2

Query: 446 YTLEGPTCFLPII------PVIIPFWRSKFGRLVTLSKEVESG 336
           +T+  P  FL ++      PVI+P+WR +   ++ L +   SG
Sbjct: 376 FTIYFPALFLGVVGTFLIAPVIVPYWRMRRYLIIQLIRVFLSG 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,785,104
Number of Sequences: 5004
Number of extensions: 59820
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)