Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3824
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787...    31   1.1  
08_02_1573 + 27956351-27956409,27956411-27956630,27957000-279571...    28   5.6  
08_01_0068 + 471729-472460,472578-472655,473270-473507,474130-47...    28   5.6  
12_01_0505 - 4005211-4005234,4005235-4005432,4005522-4006006,400...    28   7.5  
11_02_0068 + 7991816-7992603,7995209-7997177                           28   7.5  
08_01_0822 + 7976216-7978498,7978612-7978698,7979052-7979195           28   7.5  
06_02_0325 + 14428065-14428799,14428916-14428993,14429607-144298...    28   7.5  
06_01_1202 + 10389090-10389140,10389218-10389853,10390355-103904...    28   7.5  

>05_05_0230 -
           23476919-23477372,23477656-23477695,23478578-23478700,
           23479114-23479151,23479289-23479674,23479875-23481053,
           23481805-23481928,23482733-23482779
          Length = 796

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +2

Query: 551 TKKTSLSSCTWPSMTRTGVGTATRSTGPSARGSA 652
           ++ TSLSS T PSM+R+   ++T +  P+ R SA
Sbjct: 239 SRATSLSSSTVPSMSRSSSRSSTPTRQPAMRSSA 272


>08_02_1573 +
           27956351-27956409,27956411-27956630,27957000-27957150,
           27957602-27957807,27957967-27958020
          Length = 229

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 23/106 (21%), Positives = 44/106 (41%)
 Frame = +1

Query: 226 SHSVSQLLPQIRPALPNWGRRVTQKWEMYRGLHPRRPPLSTSFDNVTSLPNLLRQNGIMT 405
           S  + + + Q+       GR+ T+  E+  GL    P     F     LP++ R    + 
Sbjct: 24  SEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVC 83

Query: 406 GIIGKKHVGPSSVYQFDYEQTEENNHINQVGRNITHMKLLAREFIA 543
            +   +HV  +     DY   E    + ++ +N   +K LA+++ A
Sbjct: 84  MLGDAQHVEEAEKIGLDYMDVEA---LKKMNKNKKLVKKLAKKYHA 126


>08_01_0068 +
           471729-472460,472578-472655,473270-473507,474130-474205,
           474820-474961,475326-475619,476037-476249
          Length = 590

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 204 PGGSTMPFTFSEPVASPNSASTS*LG-SPSHPEMGNVPGLAP 326
           P   + P T      SP+S ST   G SP+H +  N P +AP
Sbjct: 25  PMSPSSPSTVDASSKSPSSPSTEENGTSPAHHQADNAPVIAP 66


>12_01_0505 -
           4005211-4005234,4005235-4005432,4005522-4006006,
           4006533-4006700,4007128-4007203,4007327-4007409,
           4007511-4007589,4007685-4007753,4008174-4008266,
           4008668-4008713,4009398-4009522
          Length = 481

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 19/76 (25%), Positives = 35/76 (46%)
 Frame = +1

Query: 241 QLLPQIRPALPNWGRRVTQKWEMYRGLHPRRPPLSTSFDNVTSLPNLLRQNGIMTGIIGK 420
           QL  ++ P+L  +  R +  WEM R +    PP   +  N+ S  + +  N   T ++ K
Sbjct: 317 QLFLRVHPSLMTYSTRSSLLWEMKREIDGLLPP---NAKNIQSAIDQILMNRDWT-LLAK 372

Query: 421 KHVGPSSVYQFDYEQT 468
           +    S  Y   Y+++
Sbjct: 373 QEAAFSPTYNRSYKKS 388


>11_02_0068 + 7991816-7992603,7995209-7997177
          Length = 918

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -1

Query: 642 LAEGPVLRVAVPTPVRVMEGHVQEERLVFFVCTRDELPGEQL 517
           LA GP +RV V   +  +  +V E+RLV     RDE+ G  L
Sbjct: 135 LASGPSVRVKVDPRLSAL--YVDEDRLVGIDAPRDEIIGRLL 174


>08_01_0822 + 7976216-7978498,7978612-7978698,7979052-7979195
          Length = 837

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 205 LVVQQCLSHSVSQLLPQIRPALPNWGRRVTQKWEMYRGL 321
           LV +   + S++ LL +  P LP+W +RV    ++ RGL
Sbjct: 579 LVYEYMPNGSLANLLFKPDPPLPSWSKRVAIALDVARGL 617


>06_02_0325 +
           14428065-14428799,14428916-14428993,14429607-14429844,
           14431199-14431296,14431770-14432063,14432418-14432702
          Length = 575

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 204 PGGSTMPFTFSEPVASPNSASTS*LG-SPSHPEMGNVPGLAP 326
           P   + P T      SP+S ST   G SP+H +  N P +AP
Sbjct: 25  PMSLSSPSTVDASSKSPSSPSTEENGTSPAHHQADNAPVIAP 66


>06_01_1202 +
           10389090-10389140,10389218-10389853,10390355-10390439,
           10390536-10390654,10391251-10391318,10391401-10391710
          Length = 422

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = -2

Query: 386 RSKFGRLVTLSKEVESGGRRGCKPRYI---SHFWVTRRPQLGSAGRIWGSNWL 237
           + +F RL  +      G   GC+P      +HF    R QL +A  I G NWL
Sbjct: 128 KKRFTRLFVVLHPCIQGFLGGCRPYLAIDSTHFTGKYRGQLATACAIDGHNWL 180


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,781,032
Number of Sequences: 37544
Number of extensions: 421004
Number of successful extensions: 1277
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)