Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3824
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.6  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    22   4.5  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   4.5  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   4.5  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   7.9  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 480 PH*SGRSQHHPHEAARP 530
           PH    SQ+HPH  + P
Sbjct: 318 PHQHHPSQYHPHRGSSP 334


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 193 RETGLVVQQCLSHSVSQLLPQIRP 264
           R+ G V  +CL  ++  +LP  RP
Sbjct: 145 RKEGKVEGKCLIEALDAILPPTRP 168


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 193 RETGLVVQQCLSHSVSQLLPQIRP 264
           R+ G V  +CL  ++  +LP  RP
Sbjct: 161 RKEGKVEGKCLIEALDAILPPTRP 184


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 193 RETGLVVQQCLSHSVSQLLPQIRP 264
           R+ G V  +CL  ++  +LP  RP
Sbjct: 218 RKEGKVEGKCLIEALDAILPPTRP 241


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 457 YEQTEENNHINQVGRNITHMKLLAREFIASANKE 558
           Y+Q +E   I+QVG  I     +  E + +A ++
Sbjct: 677 YQQLKEQGQISQVGGGIQQNVEVLPENLVNAQQQ 710


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,639
Number of Sequences: 438
Number of extensions: 4525
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)