Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3823
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0685 - 20679883-20679927,20680034-20680087,20680179-206803... 123 1e-28
05_05_0359 + 24393254-24393260,24393952-24394163,24394243-243942... 122 3e-28
04_04_1237 - 31991817-31992569,31993452-31993550,31994343-319949... 112 2e-25
01_06_0992 - 33644712-33644726,33644769-33644822,33644915-336451... 105 4e-23
01_01_0671 - 5137787-5137843,5138420-5138503,5138595-5138662,513... 36 0.035
11_02_0028 + 7517196-7517206,7517256-7517312,7517423-7517503,751... 28 5.4
01_01_0381 - 2961422-2963917 28 7.1
>07_03_0685 - 20679883-20679927,20680034-20680087,20680179-20680390,
20680476-20680550,20683094-20683168,20686196-20686264,
20686349-20686502,20686577-20686654,20689102-20689194,
20689491-20689640,20690134-20690268,20691009-20691098,
20691412-20691453,20691796-20692053,20692131-20692207,
20693126-20693186,20693687-20693905,20694936-20695208,
20695314-20695505,20695841-20696011
Length = 840
Score = 123 bits (296), Expect = 1e-28
Identities = 53/83 (63%), Positives = 68/83 (81%)
Frame = +2
Query: 47 VHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQR 226
VHVRIQQRNGRK+LTTVQGL E+ KI++ KKEF CNGTVV+ PE G+V+QLQGDQR
Sbjct: 758 VHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQR 817
Query: 227 ENICQWLTKSGLVKPEQLKVHGF 295
+N+ +L ++G+VK E +K+HGF
Sbjct: 818 KNVSNFLVQAGIVKKEHIKIHGF 840
>05_05_0359 +
24393254-24393260,24393952-24394163,24394243-24394296,
24394400-24394444
Length = 105
Score = 122 bits (293), Expect = 3e-28
Identities = 52/83 (62%), Positives = 67/83 (80%)
Frame = +2
Query: 47 VHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQR 226
VHVRIQQRNGRK+LTTVQGL EY KI++ KKEF CNGTVV+ PE G+V+QLQGDQR
Sbjct: 23 VHVRIQQRNGRKSLTTVQGLKKEYSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQR 82
Query: 227 ENICQWLTKSGLVKPEQLKVHGF 295
+N+ +L ++G+ K + +K+HGF
Sbjct: 83 KNVATFLVQAGIAKKDNIKIHGF 105
>04_04_1237 -
31991817-31992569,31993452-31993550,31994343-31994976,
31995329-31995585
Length = 580
Score = 112 bits (270), Expect = 2e-25
Identities = 47/83 (56%), Positives = 64/83 (77%)
Frame = +2
Query: 47 VHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQR 226
VHVR+QQRNGRKTLTTVQG+ EY+ K++R K+E CNG VVE E G+++QLQGD R
Sbjct: 498 VHVRVQQRNGRKTLTTVQGIGGEYNYAKVLRDLKRELCCNGNVVEDKELGKIIQLQGDHR 557
Query: 227 ENICQWLTKSGLVKPEQLKVHGF 295
++ +L K+G+V+ + +KVHGF
Sbjct: 558 NSVSDFLAKAGMVRKDNIKVHGF 580
>01_06_0992 -
33644712-33644726,33644769-33644822,33644915-33645126,
33645436-33645472
Length = 105
Score = 105 bits (251), Expect = 4e-23
Identities = 50/88 (56%), Positives = 62/88 (70%)
Frame = +2
Query: 2 ADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVVE 181
A+A SS VHVRIQQRNGRK+LTTVQGL EY KI++ KKEF CNGTVV+
Sbjct: 18 ANAEDSSVGAGSKDYVHVRIQQRNGRKSLTTVQGLKKEYSYNKILKDLKKEFCCNGTVVQ 77
Query: 182 HPEYGEVLQLQGDQRENICQWLTKSGLV 265
PE G+V+QLQGDQR+N+ +L + +
Sbjct: 78 DPELGQVIQLQGDQRKNVATFLVQIAFI 105
>01_01_0671 -
5137787-5137843,5138420-5138503,5138595-5138662,
5138854-5138935,5139282-5139346,5139504-5139747
Length = 199
Score = 35.5 bits (78), Expect = 0.035
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +2
Query: 68 RNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQW 244
RN RK +T V+GL L + K+FA +VV+ P E + +QGD +I ++
Sbjct: 115 RNKRKCVTVVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEF 174
Query: 245 LTKSGLVKPE 274
+T + PE
Sbjct: 175 ITDTWPDVPE 184
>11_02_0028 +
7517196-7517206,7517256-7517312,7517423-7517503,
7518009-7518108,7518454-7518507,7519045-7519115,
7519248-7519455,7519647-7519700,7519934-7520025,
7520090-7520285,7521158-7521339,7521429-7521496,
7522848-7522920,7523010-7523071,7523155-7524079,
7524843-7525133,7525601-7525871
Length = 931
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/22 (63%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
Frame = -1
Query: 190 LRVLHD-RTVARELLLACPHDL 128
LR+LHD + VAR++L A PHDL
Sbjct: 564 LRMLHDGKWVARKVLGAVPHDL 585
>01_01_0381 - 2961422-2963917
Length = 831
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 98 QGLSSEYDLKKIVRACKKEFAC-NGTVVEHPEYGEVLQL 211
Q L E DLK++ R CK C V+ P G+V+Q+
Sbjct: 751 QKLCGEADLKEVERVCKIGCWCIQEDEVDRPTMGQVVQI 789
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,378,898
Number of Sequences: 37544
Number of extensions: 328823
Number of successful extensions: 812
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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