Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3823
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.5  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   5.7  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   9.9  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   9.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.9  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   9.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 324  PHSTLYYERLRVVIINPIKNMYLESTDVYREKRTRLSAPCA 446
            PHSTL Y+     ++ P K    +S D  +E  T  +A  A
Sbjct: 1072 PHSTLEYKVKERHLMRPRKRDQKQSDDKTKETSTVTAAAAA 1112


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -1

Query: 499 AAIIYKIYNILYNRGSRKAQGADNRVLFSL*TSVLSKYI 383
           +++I +  N+  +RGS    G +N   + + T+  SKY+
Sbjct: 173 SSVIEEAQNLKMSRGSSVVTGMNNIETYIVNTNYSSKYM 211


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/29 (24%), Positives = 14/29 (48%)
 Frame = -3

Query: 611 ELLQQFKNTMSYKNKNQAIRYIHYFVRLI 525
           +++    N  +Y N N   + +HY +  I
Sbjct: 313 KIISSLSNNYNYNNYNNNYKPLHYNINYI 341


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 424 HGCPRPVPCDFLCC 465
           H C   + CD LCC
Sbjct: 107 HLCKLWLTCDVLCC 120


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 424 HGCPRPVPCDFLCC 465
           H C   + CD LCC
Sbjct: 107 HLCKLWLTCDVLCC 120


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 354 RVVIINPIKNMYLESTDVYR 413
           R ++  PI N Y E+  +Y+
Sbjct: 773 RGILFMPIPNRYREAKQIYK 792


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 424 HGCPRPVPCDFLCC 465
           H C   + CD LCC
Sbjct: 107 HLCKLWLTCDVLCC 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,713
Number of Sequences: 438
Number of extensions: 3635
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)