Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3821
(576 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 142 2e-35
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 101 8e-23
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 97 2e-21
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 94 1e-20
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc... 85 5e-18
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 74 2e-14
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 73 3e-14
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 27 1.5
SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4 |Schizosa... 27 1.5
SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharo... 27 1.5
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi... 26 3.4
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 3.4
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 26 4.5
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 4.5
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe... 25 6.0
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces... 25 7.9
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 25 7.9
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha... 25 7.9
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 25 7.9
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 142 bits (345), Expect = 2e-35
Identities = 66/126 (52%), Positives = 89/126 (70%)
Frame = +1
Query: 106 MSSIGTGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYE 285
MSSIGTGYDL FSPDGR+FQ EYA KAVEN+ T IG++ +DGV+ A+EK++TSKL +
Sbjct: 1 MSSIGTGYDLGLF-FSPDGRLFQAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLLK 59
Query: 286 PGANKRIFHIDEHVGMAVAGLISDARQIVETARSEASXYRSQYGSPVPLKYLNERVSMYM 465
P N RI +D H+G+A G I D + IV+ AR EA+ +R YGSP+P + +R+ Y+
Sbjct: 60 PRVNNRIGSVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYV 119
Query: 466 HAYTLY 483
+T Y
Sbjct: 120 QLFTCY 125
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 101 bits (242), Expect = 8e-23
Identities = 46/99 (46%), Positives = 66/99 (66%)
Frame = +1
Query: 127 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANKRI 306
YD + FSP+GR+FQVEYA +A++ T IG++ KD VV VEK +TS L E + +++
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLMESHSVEKL 67
Query: 307 FHIDEHVGMAVAGLISDARQIVETARSEASXYRSQYGSP 423
F ID H+G A++GL +DAR I+E AR + +R Y P
Sbjct: 68 FEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEP 106
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 96.7 bits (230), Expect = 2e-21
Identities = 51/150 (34%), Positives = 84/150 (56%), Gaps = 1/150 (0%)
Frame = +1
Query: 127 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGAN-KR 303
YD + FSP+GR++QVEYA +A+ ++G +G+ KDG+V A EK +TSKL E + ++
Sbjct: 5 YDSRTTIFSPEGRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKLLEQEESAEK 64
Query: 304 IFHIDEHVGMAVAGLISDARQIVETARSEASXYRSQYGSPVPLKYLNERVSMYMHAYTLY 483
++HI +++ AVAGL +DA ++ AR Y + +P + L RV YT Y
Sbjct: 65 LYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQGYTQY 124
Query: 484 RRCSAIWGAQSLWAHGQTMKALIMYMLHPS 573
+G L+A ++ ++ +PS
Sbjct: 125 GGLRP-FGVSFLYAGWDHIRGYQLFQSNPS 153
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 94.3 bits (224), Expect = 1e-20
Identities = 48/119 (40%), Positives = 68/119 (57%)
Frame = +1
Query: 121 TGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANK 300
+GYD + S FSPDGR+ QVEY +AV T I LRG + +V VE+ KL +
Sbjct: 2 SGYDRALSVFSPDGRLLQVEYGQEAVRRGTTAIALRGNECIVIGVERKNVPKLQNVSNFQ 61
Query: 301 RIFHIDEHVGMAVAGLISDARQIVETARSEASXYRSQYGSPVPLKYLNERVSMYMHAYT 477
+I +D HV +A AGL +DAR +++ AR EA ++ PV ++YL V+ YT
Sbjct: 62 KIAMVDNHVCLAFAGLNADARILIDKARVEAQNHKLNLADPVSIEYLTRYVAGVQQKYT 120
>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 85.4 bits (202), Expect = 5e-18
Identities = 43/112 (38%), Positives = 68/112 (60%), Gaps = 1/112 (0%)
Frame = +1
Query: 124 GYDLSASQFSPDGRVFQVEYAAKAVENSG-TVIGLRGKDGVVFAVEKLITSKLYEPGANK 300
G+D + + FSP+GR++QVEYA KA N+G T +G+ GK+ +K + KL + K
Sbjct: 6 GFDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDASTVK 65
Query: 301 RIFHIDEHVGMAVAGLISDARQIVETARSEASXYRSQYGSPVPLKYLNERVS 456
+F I + +G + G I+DAR V ARSEA+ + + G P+P L +R++
Sbjct: 66 HVFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMA 117
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 73.7 bits (173), Expect = 2e-14
Identities = 37/110 (33%), Positives = 61/110 (55%)
Frame = +1
Query: 127 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANKRI 306
YD A+ +SP GR+ QVEYA +A++ +GL K V K +L K++
Sbjct: 6 YDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEEL--SSYQKKL 63
Query: 307 FHIDEHVGMAVAGLISDARQIVETARSEASXYRSQYGSPVPLKYLNERVS 456
ID+H+G+A+AGL DAR + + EA ++ + P+P++ L +V+
Sbjct: 64 IRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVA 113
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 72.9 bits (171), Expect = 3e-14
Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 1/150 (0%)
Frame = +1
Query: 127 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANKRI 306
Y S + FSP+G++ Q+EYA AV T +G++ DGVV A EK TS+L + +++
Sbjct: 5 YAFSLTTFSPNGKLVQIEYALNAVNAGVTSVGIKATDGVVLATEKKPTSELAIGASLEKV 64
Query: 307 FHIDEHVGMAVAGLISDARQIVETARSEA-SXYRSQYGSPVPLKYLNERVSMYMHAYTLY 483
I +GM +G+ D R +V+ +R A + Y+ Y P K L + ++ M T
Sbjct: 65 CAITPDIGMVYSGMGPDFRVLVDKSRKVAQTTYKKIYNEYPPTKILVQEIASVMQESTQS 124
Query: 484 RRCSAIWGAQSLWAHGQTMKALIMYMLHPS 573
SL G K +Y + PS
Sbjct: 125 GGVRPF--GVSLLVAGMDEKGPSLYQVDPS 152
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 27.5 bits (58), Expect = 1.5
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -1
Query: 261 LLNSKYHSIFSSEANYCSRIFYSLCSIFHLENAT 160
LL +KY ++SS N C +++ ++F +T
Sbjct: 488 LLRNKYPKVYSSTPNLCDQVWLDRTNLFPCNRST 521
>SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 27.5 bits (58), Expect = 1.5
Identities = 15/53 (28%), Positives = 21/53 (39%)
Frame = +1
Query: 91 KQCVNMSSIGTGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVF 249
KQC + S TG + G F V+Y KA +G + + VF
Sbjct: 32 KQCYYLDSFHTGEKTHFTYAVQSGGSFDVDYMIKAPSQKTVALGKKRRQADVF 84
>SPAC4G8.06c |trm12||tRNA methyltransferase Trm12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 27.5 bits (58), Expect = 1.5
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +1
Query: 1 VINSNTAFRNINLYFGPTLV--YLSW*KSKYIKQCVNMSSIGTGYDLSASQFSPDGRVFQ 174
V N N +NI + GP LV Y + ++ ++K+CV + + DL R++
Sbjct: 18 VQNKNKFLKNIGIISGPKLVDTYSNQFEADFLKKCVLIPTSYNKEDL-PKDILDCPRIYL 76
Query: 175 VEYAAKAVE 201
+E K+V+
Sbjct: 77 IEEEVKSVQ 85
>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 26.2 bits (55), Expect = 3.4
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3
Query: 544 PS*SVHVPITTEHPIWPNSVCIVCMRACTLKLVHLNTSVVLDCHTEICS 398
PS +V + HP WP +C C + +++L V+D H E S
Sbjct: 201 PSFTVKEKCPSGHPPWPAGICTKCQPSTV--MLNLQPFRVID-HIEFAS 246
>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 515
Score = 26.2 bits (55), Expect = 3.4
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -2
Query: 368 ICLASDMSPATAMPTCSSIWNI--LLFAPGSYNFDVINFSTANTTPSFPRR 222
I L++ + + P C +++ L + PGSY+ I+ N PR+
Sbjct: 455 IALSTKLYTGSIFPKCEKDFDLHFLAYKPGSYDLSSISIEDVNHVVHKPRK 505
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 25.8 bits (54), Expect = 4.5
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +1
Query: 232 KDGVVFAVEKLITSKLYEPGANKRIFHIDEHVGMAVAGLISDAR 363
K G+V +V++ I + YE + +FHI E++ ++++ LI R
Sbjct: 207 KSGLVNSVDRCI--QFYEKSISLPMFHIAENLAISLSCLIISFR 248
>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 350
Score = 25.8 bits (54), Expect = 4.5
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +1
Query: 79 SKYIKQCVNMSSIGTGYDLSASQFSPDGRVFQVEYAAKAVENSGTV 216
S ++ + + + +G G +S +G V + KAVENS +
Sbjct: 196 SSFVSRAASPAMVGPGVPFYSSITGANGNVLAPSGSLKAVENSDVI 241
>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 25.4 bits (53), Expect = 6.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 491 QRLYSVYACMYIETRSFKYFSGTGLP 414
QRLY+ Y Y+E +S F G P
Sbjct: 563 QRLYNFYRFQYLEEQSLYNFKIPGFP 588
>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 7.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 359 ASDMSPATAMPTCSSIWNILLFAPGSYNFDV 267
A ++ AT C+SIWN +L + G + F V
Sbjct: 272 AWEIIQATIDGICASIWNQILQSQGDFAFVV 302
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 25.0 bits (52), Expect = 7.9
Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Frame = +1
Query: 223 LRGKDGVVFAVEKLIT------SKLYEPGANKRIFHIDEHVGMAVAGLI--SDARQIVET 378
+RGK+G + E L+ S++ + G I+ H + LI ++ I+
Sbjct: 396 VRGKEGTFYVEENLVVNNLTSKSRVLDFGMEDAIYEKSTHTLLKTPALILLTEGHGIIR- 454
Query: 379 ARSEASXYRSQYGSPVPLKYLNERVSMYMHAYTLYR 486
S AS ++ + + YL R+S + L+R
Sbjct: 455 IESSASYLKTSFSATT---YLRSRLSQFASQSPLFR 487
>SPBC32H8.09 |||WD repeat protein, human WDR8
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 25.0 bits (52), Expect = 7.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 105 HEFYRNRL*PIGFSIFS*WSRF 170
HE+ NRL +GFS F WS F
Sbjct: 226 HEYRPNRLIEVGFSDFE-WSPF 246
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 25.0 bits (52), Expect = 7.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 244 VFAVEKLITSKLYEPGANKRIFHID 318
VF L +L +PGA KR+FH +
Sbjct: 137 VFPAPILDVRELTKPGAVKRVFHFE 161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,548,381
Number of Sequences: 5004
Number of extensions: 53900
Number of successful extensions: 179
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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