Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3821
(576 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical pr... 141 3e-34
Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical pr... 96 2e-20
Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical pr... 93 1e-19
AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome al... 84 8e-17
Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical pr... 80 1e-15
AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome al... 79 2e-15
Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical pr... 77 7e-15
AC024859-3|AAK29969.2| 871|Caenorhabditis elegans Hypothetical ... 30 1.4
Z68318-3|CAD57704.1| 337|Caenorhabditis elegans Hypothetical pr... 29 2.4
AF045639-5|AAC02569.2| 937|Caenorhabditis elegans Osmotic avoid... 27 7.2
AF031408-1|AAB87064.1| 937|Caenorhabditis elegans olfactory cha... 27 7.2
>Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical
protein ZK945.2 protein.
Length = 250
Score = 141 bits (342), Expect = 3e-34
Identities = 71/156 (45%), Positives = 103/156 (66%)
Frame = +1
Query: 106 MSSIGTGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYE 285
MSSIGTGYDL+AS FSPDGR+FQVEYA KAV+N+GT+I +RGK+GVV +KLI+SKLY
Sbjct: 1 MSSIGTGYDLAASTFSPDGRIFQVEYAQKAVDNAGTMIAIRGKNGVVVVADKLISSKLYT 60
Query: 286 PGANKRIFHIDEHVGMAVAGLISDARQIVETARSEASXYRSQYGSPVPLKYLNERVSMYM 465
AN R+F+++++VG+AVAG D + A EA + Y P+P++ + V+ Y+
Sbjct: 61 DNANPRMFNVNDNVGVAVAGNYPDGFALKNYAYGEAMKWLKDYREPMPIQNIANSVAEYI 120
Query: 466 HAYTLYRRCSAIWGAQSLWAHGQTMKALIMYMLHPS 573
H +TL S +GA + + ++++ PS
Sbjct: 121 HIHTL--GISRPFGAGAFFMSWNKQTGGRLFLVEPS 154
>Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical
protein C36B1.4 protein.
Length = 253
Score = 95.9 bits (228), Expect = 2e-20
Identities = 47/117 (40%), Positives = 70/117 (59%)
Frame = +1
Query: 127 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANKRI 306
YD + + FSPDG +FQVEYA +AV+ T +G+RGKD +V VEK L + ++I
Sbjct: 4 YDRAITIFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDCIVIGVEKKSIPALQDDRTIRKI 63
Query: 307 FHIDEHVGMAVAGLISDARQIVETARSEASXYRSQYGSPVPLKYLNERVSMYMHAYT 477
ID+HV +A AGL +DAR +V+ AR E Y+ PV + Y++ ++ +T
Sbjct: 64 HMIDDHVMLAFAGLSADARVLVDRARIECQSYKLTLEDPVTVAYISRYIANTKQRFT 120
>Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical
protein F25H2.9 protein.
Length = 248
Score = 93.5 bits (222), Expect = 1e-19
Identities = 45/110 (40%), Positives = 71/110 (64%)
Frame = +1
Query: 127 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANKRI 306
YD + FSP+GR+FQVEYA +AV+ T IG++ +GV+ A EK TSKL A ++I
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAVKLGSTSIGIKTSEGVLLAAEKRSTSKLMVNDAIEKI 67
Query: 307 FHIDEHVGMAVAGLISDARQIVETARSEASXYRSQYGSPVPLKYLNERVS 456
+D+H+G+ AGLI+D+R +VE A+ EA + Y + ++ + + V+
Sbjct: 68 SKVDQHIGVTFAGLIADSRTLVERAQIEAQNFWFTYNRKIRVEDVTQSVA 117
>AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome alpha
subunit protein 3 protein.
Length = 250
Score = 83.8 bits (198), Expect = 8e-17
Identities = 37/118 (31%), Positives = 70/118 (59%), Gaps = 1/118 (0%)
Frame = +1
Query: 127 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGA-NKR 303
YD + FSP+GR++QVEYA +A+ ++GT +G+ +G+V A E+ KL + ++
Sbjct: 5 YDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILSSEGIVVAAERKNVHKLLDDSVMTEK 64
Query: 304 IFHIDEHVGMAVAGLISDARQIVETARSEASXYRSQYGSPVPLKYLNERVSMYMHAYT 477
++ + +++ VAG+ +DA ++ R A+ YR+ YG +P++ L + + YT
Sbjct: 65 VYRLSDNISCTVAGITADANILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEKQRYT 122
>Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical
protein D1054.2 protein.
Length = 231
Score = 79.8 bits (188), Expect = 1e-15
Identities = 44/121 (36%), Positives = 64/121 (52%)
Frame = +1
Query: 115 IGTGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGA 294
+G Y S + FSP G++ Q+EYA AV+N +GLR KDGVV A E + S L +
Sbjct: 1 MGDHYGFSLTTFSPSGKLMQIEYALNAVKNGQPSVGLRAKDGVVLATEN-VGSVLTDD-- 57
Query: 295 NKRIFHIDEHVGMAVAGLISDARQIVETARSEASXYRSQYGSPVPLKYLNERVSMYMHAY 474
++ I +H+G +G+ D R +V+ AR A Y YG +P L ++ M Y
Sbjct: 58 QPKVEQISKHIGCVYSGMGPDFRILVKKARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEY 117
Query: 475 T 477
T
Sbjct: 118 T 118
>AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome alpha
subunit protein 6 protein.
Length = 260
Score = 79.4 bits (187), Expect = 2e-15
Identities = 39/119 (32%), Positives = 65/119 (54%)
Frame = +1
Query: 127 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANKRI 306
YD + +SP GR+ QVEYA +A++ +G++ + V K + L K++
Sbjct: 6 YDGDVTVWSPQGRLHQVEYAVEAMKQGSATVGIKSETHAVIVALKRAQNDL--SSHQKKV 63
Query: 307 FHIDEHVGMAVAGLISDARQIVETARSEASXYRSQYGSPVPLKYLNERVSMYMHAYTLY 483
+ ID H G+++AGL+SD R + ++E S +R Y VP+K L E + + + A T Y
Sbjct: 64 YEIDTHAGVSIAGLLSDGRILARYLQTECSSWRWDYKQAVPIKKLAESMQLKLQANTQY 122
>Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical
protein C15H11.7 protein.
Length = 246
Score = 77.4 bits (182), Expect = 7e-15
Identities = 38/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Frame = +1
Query: 124 GYDLSASQFSPDGRVFQVEYAAKAVENSG-TVIGLRGKDGVVFAVEKLITSKLYEPGANK 300
G+D + FSP+GRV+QVEYA KA+ ++ T + ++G D V AV+K + L
Sbjct: 8 GFDRHITIFSPEGRVYQVEYAFKAINSTNLTAVAVKGADAAVIAVQKRVPDSLIVADTVT 67
Query: 301 RIFHIDEHVGMAVAGLISDARQIVETARSEASXYRSQYGSPVPLKYLNERVSMYMHAYT 477
++ I + VG G+I DA+ ++ A+ EA+ ++ + G +P + L ++++ YT
Sbjct: 68 SVYQISQSVGCCAIGMIPDAKFQIKRAQGEAASWKYKNGYDMPCELLAKKMADLNQYYT 126
>AC024859-3|AAK29969.2| 871|Caenorhabditis elegans Hypothetical
protein Y71H2AM.10 protein.
Length = 871
Score = 29.9 bits (64), Expect = 1.4
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Frame = -2
Query: 392 ASERAVSTICLASDMSPATAMPTCSSIWNILLFAPGSYNFDV-INFSTANTTPS----FP 228
A + + C++SD + PTCSS++ + GS + V ++ TT S FP
Sbjct: 327 AEDVTTQSHCISSDANIIKVSPTCSSVYLDGSESNGSSDAQVYAHYLRYTTTYSFRVWFP 386
Query: 227 RRPITVPEFSTAFAAYSTWK 168
+ P+ + S+ + WK
Sbjct: 387 KLPLKIWMSSSTLSTIKNWK 406
>Z68318-3|CAD57704.1| 337|Caenorhabditis elegans Hypothetical
protein T21B10.2b protein.
Length = 337
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 82 KYIKQCVNMSSIGTGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIG 222
KYI + I G D++AS+F DG+ + +++ A ++S + G
Sbjct: 132 KYIAELAGTGKISIGMDVAASEFFKDGK-YDLDFKNPASDSSKWLSG 177
>AF045639-5|AAC02569.2| 937|Caenorhabditis elegans Osmotic
avoidance abnormal protein9 protein.
Length = 937
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = +1
Query: 181 YAAKAVENSGTVIGLRGKDG----VVFAVEKLITSKLYEPGANKRIFHIDEHV 327
Y AV G +I + +DG + FA EKL+T LY+ G N ++ +++
Sbjct: 40 YKWVAVRKGGELINIYERDGEEGVLKFAEEKLLTI-LYDEGQNPKLVTYSDYI 91
>AF031408-1|AAB87064.1| 937|Caenorhabditis elegans olfactory
channel protein.
Length = 937
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = +1
Query: 181 YAAKAVENSGTVIGLRGKDG----VVFAVEKLITSKLYEPGANKRIFHIDEHV 327
Y AV G +I + +DG + FA EKL+T LY+ G N ++ +++
Sbjct: 40 YKWVAVRKGGELINIYERDGEEGVLKFAEEKLLTI-LYDEGQNPKLVTYSDYI 91
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,088,731
Number of Sequences: 27780
Number of extensions: 303671
Number of successful extensions: 694
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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