Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3819
(644 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces pombe... 109 3e-25
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi... 29 0.43
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 29 0.76
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 28 1.0
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 26 5.3
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit... 25 7.1
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz... 25 7.1
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 25 9.3
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 25 9.3
>SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 109 bits (262), Expect = 3e-25
Identities = 53/108 (49%), Positives = 70/108 (64%), Gaps = 7/108 (6%)
Frame = +2
Query: 20 PPIQVNLVNGKEDISVKMSDRGGGIPRSVSELLFKYMYSTAPQPSKSDSH-------TVP 178
PPI+V + G+EDI++K+SD GGGI R L++ YM++TA D H T P
Sbjct: 317 PPIKVIVAKGQEDITIKISDEGGGISRRNIPLVWSYMFTTASPTLTDDPHDIVSANSTTP 376
Query: 179 LAGYGYGLPISRLYARYFHGDLVLVSCEGYGTDAVIYLKALTNEANEL 322
+AG+G+GLP++RLY RYF GDL L+S EGYGTD I+L L A L
Sbjct: 377 MAGFGFGLPLARLYTRYFGGDLELISMEGYGTDVYIHLNRLCESAEPL 424
>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 615
Score = 29.5 bits (63), Expect = 0.43
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 32 VNLVNGKEDISVKMSDRGGGIPRSVSELLFKYMYSTA 142
VN V GKED+S+ + +P SELL + TA
Sbjct: 239 VNFVTGKEDVSINLVALSRLLPAVASELLLLFDQVTA 275
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 28.7 bits (61), Expect = 0.76
Identities = 15/67 (22%), Positives = 32/67 (47%)
Frame = -3
Query: 621 GCPALQAETHYCFTAEVGKAVVPTRADSQYVLPPVKSEYLNRGGRTSTNLGDYRLCDIGD 442
G P + +Y + ++++P + LPP ++EY+ G R + + +L +G+
Sbjct: 321 GEPDNNGKVYYSYGPTQEQSILPLPENKHEGLPPYQNEYVPNGIRANQVVYPGQLVAVGN 380
Query: 441 ESGDTFS 421
+S S
Sbjct: 381 DSSKQLS 387
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 128 MYSTAPQPSKSDSHTVPLAGYGYGLPISR 214
MYS++ Q S+S S+T AG G+G P R
Sbjct: 870 MYSSSRQSSRSGSNTHSHAGPGFGGPSER 898
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 25.8 bits (54), Expect = 5.3
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Frame = +3
Query: 333 SIRRLRSSTAPRPS---WRT-GPAPSTPRISA 416
S L SST P+P+ + T P PSTPRIS+
Sbjct: 350 SSNTLNSSTLPQPNSTDFNTFPPLPSTPRISS 381
>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
Rep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 472
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -3
Query: 186 PASGTVCES---DLEGCGAVLYMYLNRSSDTLRGMPPPRSDIL 67
P + VC S + +GC ++LY LN+ S++ + P R + L
Sbjct: 164 PKANVVCISLVIEGDGCASLLYEDLNQISNSCPEVAPNRQNAL 206
>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -3
Query: 627 YNGCPALQAETHYCFTAEVGKA 562
Y CP L + +CF+A KA
Sbjct: 517 YPACPLLTSRVRFCFSASHNKA 538
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = +3
Query: 339 RRL-RSSTAPRPSWRTGPAPSTPRISAGGRR 428
RRL R R W P PS P GGRR
Sbjct: 70 RRLERGGGVLRVEWAKQPPPSGPGSKRGGRR 100
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 424 LPPALIRGVEGAGPVRQLGR 365
LP + RGV AGP + LG+
Sbjct: 797 LPTPIQRGVSKAGPAKHLGK 816
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,420,785
Number of Sequences: 5004
Number of extensions: 46505
Number of successful extensions: 153
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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