Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3819
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M98552-5|AAA28207.1|  401|Caenorhabditis elegans Hypothetical pr...   155   2e-38
AF039715-5|AAB96730.1|  391|Caenorhabditis elegans Hypothetical ...    28   4.9  
AL023828-24|CAD56604.1|  196|Caenorhabditis elegans Hypothetical...    27   8.6  
AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical ...    27   8.6  
AC024792-6|AAF60686.2|  901|Caenorhabditis elegans Hypothetical ...    27   8.6  

>M98552-5|AAA28207.1|  401|Caenorhabditis elegans Hypothetical
           protein ZK370.5 protein.
          Length = 401

 Score =  155 bits (377), Expect = 2e-38
 Identities = 72/123 (58%), Positives = 94/123 (76%)
 Frame = +2

Query: 20  PPIQVNLVNGKEDISVKMSDRGGGIPRSVSELLFKYMYSTAPQPSKSDSHTVPLAGYGYG 199
           P I+V +V G+ED+S+K+ DRGGG+ R++ E L+ YMYSTAP P + D    PLAGYGYG
Sbjct: 267 PDIKVYVVKGQEDLSIKICDRGGGVSRTILERLYNYMYSTAPPPPR-DGTQAPLAGYGYG 325

Query: 200 LPISRLYARYFHGDLVLVSCEGYGTDAVIYLKALTNEANELLPVFNKTSSKFYRPSSQLA 379
           LP+SRLYARYF GDL LVS EG+GTDA IYLKA+  EA+E+LP+++ +S +      Q+A
Sbjct: 326 LPLSRLYARYFLGDLFLVSMEGHGTDACIYLKAVPVEASEVLPIYSTSSRRNLTMGPQVA 385

Query: 380 DWS 388
           DWS
Sbjct: 386 DWS 388


>AF039715-5|AAB96730.1|  391|Caenorhabditis elegans Hypothetical
           protein R06A10.4 protein.
          Length = 391

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 330 SSIRRLRSSTAPRPSWRTGPAPST 401
           +S+ RL SS A +  W TG  PST
Sbjct: 306 NSVERLSSSAAMKHEWLTGERPST 329


>AL023828-24|CAD56604.1|  196|Caenorhabditis elegans Hypothetical
           protein Y17G7B.21 protein.
          Length = 196

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +3

Query: 330 SSIRRLRSSTAPRPSWRTGPAPSTPRISAGGRRCLR 437
           S+I    SS +PR S  T P  ST   S G  R +R
Sbjct: 19  STIPSTSSSVSPRTSGATSPTSSTSSSSTGSARRVR 54


>AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical
           protein C26G2.1 protein.
          Length = 1270

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 134 STAPQPSKSDSHTVPLAGYGYGLPISRLYAR-YFHGDLVLVSCEGYG 271
           +T P+ S +  H + +        I+ L  R +F GD+V V+CE  G
Sbjct: 412 ATNPEGSSAKQHVIKIIAPPKAPIITGLEDRKFFEGDIVNVTCEAQG 458


>AC024792-6|AAF60686.2|  901|Caenorhabditis elegans Hypothetical
           protein Y48G1A.1 protein.
          Length = 901

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
 Frame = +3

Query: 369 PSWRTGPAPSTPRISAGGRRCLRSHHRYRIAY--------SPLGWWKCGRRDSGIQ 512
           P     P+PSTP+ S+GG R      R++  +        SP   WK G   + I+
Sbjct: 757 PEMSISPSPSTPKSSSGGGRFAPKGTRFKKDFEILVKPSQSPQNPWKMGGASASIR 812


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,070,884
Number of Sequences: 27780
Number of extensions: 290428
Number of successful extensions: 839
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)