Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3819
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    26   0.27 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.83 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.83 

>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 128 MYSTAPQPSKSDSHTVPLAGYGYG-LPISRLYARYFH 235
           ++   P P+  DS  V +   GYG +P ++ + R+F+
Sbjct: 50  LFPPGPPPNNEDSSGVIVGASGYGFVPPNQAFYRFFY 86


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -2

Query: 607  SSRNALLLHGRSRQGGGTYPRGLTIRPTTSKI*IPE---SRRPHFHQPRGL 464
            S+ +++LLH +S   GG    G T+   T+   + E   SR    H+ +GL
Sbjct: 1415 STSSSILLHWKSGHNGGASLTGYTLHYRTAHGNLDELQLSRHATSHELKGL 1465


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -2

Query: 607  SSRNALLLHGRSRQGGGTYPRGLTIRPTTSKI*IPE---SRRPHFHQPRGL 464
            S+ +++LLH +S   GG    G T+   T+   + E   SR    H+ +GL
Sbjct: 1411 STSSSILLHWKSGHNGGASLTGYTLHYRTAHGNLDELQLSRHATSHELKGL 1461


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,074
Number of Sequences: 438
Number of extensions: 3731
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)