Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3802
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   3.0  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    26   5.3  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    25   9.3  
SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.3  

>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 410 NFELFYSNCSLSENKTNN*KCTVKLSVYV-LLLIKCHNKIKL 532
           NF++  SNC+++  + NN     ++++   LLL+   N IKL
Sbjct: 172 NFKVVLSNCAINSKEDNNLVTEDRVNLGAKLLLVPVQNLIKL 213


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +2

Query: 383 ASNVTQPFSNFELFYSNCSLSENKTNN*KCTVKLSVYVLLLIKCHNKIKLS 535
           A  +++   + E F  +C+L EN+  +    +++    LLL K   K+KL+
Sbjct: 532 AQKISKYLISLEEFSCSCNLRENQPGSLSLFLQIDALELLLRKTALKLKLT 582


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
            Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -2

Query: 453  LFSDKLQLL*NSSKFENGWVTLDAGGNGPAALDISWRGLGSAVDSR 316
            L  D+L    N S +   WV  D G        IS  G+GSA + R
Sbjct: 1125 LMQDRLM---NCSDYAQSWVCRDCGSIISIMSTISMNGVGSASEVR 1167


>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 743 YESVIKTNFINSRSRHSCLLFFTY 672
           YE+ +KT F+N+ SR   L+   Y
Sbjct: 257 YETDLKTTFLNAFSRDELLMLVNY 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,287,063
Number of Sequences: 5004
Number of extensions: 70259
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)