Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3802
         (784 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1120 - 8884760-8885017,8886088-8886150,8887365-8887627,888...    30   2.4  
08_01_0840 - 8213932-8214414                                           28   7.3  
05_01_0133 + 895107-895280,895960-896271,896815-897081,897161-89...    28   7.3  
03_05_0388 + 23726957-23727418,23730016-23730262,23731072-237312...    28   7.3  
05_06_0124 - 25822176-25822633,25822738-25825420                       28   9.6  
04_04_0529 - 25997736-25998055,25998441-25998804,25999563-259996...    28   9.6  
03_06_0678 - 35480711-35484658                                         28   9.6  
01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510...    28   9.6  

>01_01_1120 -
           8884760-8885017,8886088-8886150,8887365-8887627,
           8887728-8887882,8888194-8888465,8889593-8889735,
           8890150-8890444
          Length = 482

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -2

Query: 162 CAIGRRRGSGTQSRIVDQGSR*SISRGYVTHFTFKMAAYVEHELSFTGKP 13
           C +  RRGSG+ +  V      +++   +     K+   V HELS +G P
Sbjct: 52  CDVDARRGSGSSAAAVATTRTGAVAGNPLEFMRSKLMLLVSHELSLSGGP 101


>08_01_0840 - 8213932-8214414
          Length = 160

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 290 NFELIISACLLSTAEPRPLQLMSSAAGPLPPASNVTQP 403
           NF+ +   C +    P+P  L S+A+ PLP A ++  P
Sbjct: 21  NFDSLSMGCHICDDPPKPGGLCSNASLPLPSAPDLALP 58


>05_01_0133 +
           895107-895280,895960-896271,896815-897081,897161-897265
          Length = 285

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 137 QVHSPELSTRDLAKASAAAMSLTLPSKWPRTWN 39
           Q+++P   +R  A    AA  +T+P+  P  WN
Sbjct: 171 QLYTPAYVSRITAMVRGAARGITVPTNLPSVWN 203


>03_05_0388 +
           23726957-23727418,23730016-23730262,23731072-23731220,
           23731313-23731597,23731665-23731889,23734251-23734445
          Length = 520

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 287 MNFELIISACLLSTAEPRPLQLMSSAA-GPLPPASNVTQP 403
           M  E+I SA  + TA+      M+ A  GP PPASN   P
Sbjct: 437 MTVEIIGSASQVQTAQQLVQNFMAEAPQGPPPPASNPPAP 476


>05_06_0124 - 25822176-25822633,25822738-25825420
          Length = 1046

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 64  GKVSDIAAADALARSLVDNSGLCT*AAPAPNSA 162
           G++    A  A  +S + N GLC  AAPA N A
Sbjct: 594 GEIPAALAISAYDQSFLGNPGLCVSAAPAGNFA 626


>04_04_0529 - 25997736-25998055,25998441-25998804,25999563-25999675,
            25999880-25999989,26000155-26000311,26000390-26000915,
            26001101-26001265,26002470-26002589,26003022-26003093,
            26003422-26003499,26003965-26004057,26004491-26004647,
            26005351-26005589,26006907-26007050,26007637-26007666,
            26010610-26010993,26011486-26011554,26012353-26012418,
            26013166-26013255,26013583-26013628,26014318-26014419,
            26014552-26014694
          Length = 1195

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
 Frame = -2

Query: 516  WHLINNKT*TDSFTVHF*LFVLFSDKLQLL*NSSKFENGWVTLD-AGG-NGPA--ALDIS 349
            W L  NK   D FTVH     + S+ L  L N S+ + GW T+  AGG + P    L + 
Sbjct: 1074 WSLAINKQEIDDFTVH-----VDSENLVPLGNKSEID-GWHTIQFAGGKDSPTKFQLTLF 1127

Query: 348  WRGLGSAVDSRQAEMMSSKFI 286
            W         +Q E     F+
Sbjct: 1128 WASNSKDAFPKQVESEDHSFL 1148


>03_06_0678 - 35480711-35484658
          Length = 1315

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +1

Query: 466 KMHRKAIGLRFIVD*MPQQN*IIFRIFLVGKM*VLVDGIEVI 591
           K H K +G   ++  +P  N I+FR  +  K+ ++++ IEV+
Sbjct: 93  KGHYKKLGSIVVIKLIPTHNRILFRYRMGNKLRMILNAIEVL 134


>01_06_0192 + 27347369-27348826,27349124-27349264,27349350-27351081,
            27353739-27354606,27354784-27355957
          Length = 1790

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 311  ACLLSTAEPRPLQLMSSAAGPLPPASNVTQPFSNFELFYSNCSLSENKTN 460
            +C +S+ E  P QL + +A   PP SNV     N E    N  ++ N++N
Sbjct: 1199 SCGVSSRE-HPTQLGTCSAQQEPPTSNVEDKEDNTEKIDFNEKVATNRSN 1247


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,782,970
Number of Sequences: 37544
Number of extensions: 435914
Number of successful extensions: 1183
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)