Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3801
(764 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 31 0.24
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 30 0.31
SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce... 28 1.3
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 27 2.2
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom... 27 2.2
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 2.9
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip... 27 2.9
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 27 2.9
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 27 3.9
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos... 26 5.1
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc... 26 5.1
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 9.0
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po... 25 9.0
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces... 25 9.0
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 30.7 bits (66), Expect = 0.24
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +3
Query: 387 SPTHSPAKMMNGSAYSTPSRGEREPAEH*GNPITGDGYKSMNGQMNTMTSINGTSN 554
SP + P + + ++ +TPS +RE A H NPI G G N M S + T++
Sbjct: 412 SPFNKPNSVHSEASRNTPSSIDRENASH-SNPIMMHG-NDFGGNFNNMQSRSTTTS 465
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 30.3 bits (65), Expect = 0.31
Identities = 26/92 (28%), Positives = 42/92 (45%)
Frame = +3
Query: 99 AQFKHVELYKIGHGKNRVPNAPKSCIAEIFNGDMTDGSPKKNGMARQRVVRDTPTRPRDT 278
+Q+ H L + + ++ P S AE F+ D SPK R + TR R
Sbjct: 483 SQYSHKTLDRDINSRSYFDREP-SLDAERFHSRSVDASPKAV-RRESRSFFPSLTRKR-- 538
Query: 279 HSRLFGQAASNGPVSPLITDTIRSNIQFGDSE 374
S+ FG + SN P + DT +S+ + +S+
Sbjct: 539 -SKFFGSSQSNSPKDSPLRDTHKSSDEHSESK 569
>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Frame = +3
Query: 327 LITDTIRSNIQFGDSEMNG-----GSPTHSPAK 410
++ DT R I+F DS +NG G+P +PAK
Sbjct: 36 VMIDTTRGEIEFSDSAVNGTMDIEGAPKFAPAK 68
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 27.5 bits (58), Expect = 2.2
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +3
Query: 141 KNRVPNAPKSCIAEIFNGDMTDGSPKKNGMARQRVVRDTPTRPRDTHSRLFGQAASNGPV 320
K V N K + +I + + PK + + +QR D P R T S GQA S +
Sbjct: 146 KQEVANKTKLALQKILSKQIAQSQPK-SAVVQQR---DDPVYIRYTPSNQMGQALSKQRI 201
Query: 321 SPLIT 335
++T
Sbjct: 202 IKMVT 206
>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 2.2
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 284 ETFRTGSEQWTRFSIDHRHH 343
+ F G+ +W+ F I+H HH
Sbjct: 160 KAFYWGTSEWSAFEIEHAHH 179
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +1
Query: 433 RHPAEVRGSQPNTKATQSPVTDTSR*TGK*TQ*RQLMAPAILSTTTACRPGGYSSGL 603
R P+ G +P T +T + +S+ + + +Q AP+ TT+A PGG S +
Sbjct: 486 RKPSST-GQEPTTPSTPAKSAQSSKHARRPS--KQASAPSSPGTTSAAVPGGKKSAI 539
>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
antiporter Sod22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 27.1 bits (57), Expect = 2.9
Identities = 21/81 (25%), Positives = 29/81 (35%)
Frame = +3
Query: 120 LYKIGHGKNRVPNAPKSCIAEIFNGDMTDGSPKKNGMARQRVVRDTPTRPRDTHSRLFGQ 299
L IG ++ N P+ I +N + S +NG+ V RP S
Sbjct: 673 LTNIGDSESEDDNIPRPGIVPFYNENNESSSDTRNGLLSDNVSESRSRRPSRAPSAAVSS 732
Query: 300 AASNGPVSPLITDTIRSNIQF 362
S PV R NI+F
Sbjct: 733 EGS--PVEEDNEAQHRPNIRF 751
>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +3
Query: 273 DTHSRLFGQAASNGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGE 452
D +R G V L + +SNI+ SPT SP + +G+ +S+ S
Sbjct: 445 DDETRTVGTPTETISVVRLRRSSSQSNIEPNGVRSPTSSPTGSPIRRTSGNRWSSGSSHS 504
Query: 453 REPAE 467
++ A+
Sbjct: 505 KKSAQ 509
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 26.6 bits (56), Expect = 3.9
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 208 AAPRRTAWRANVSSATHRR 264
A P++ W+A+V+S+TH R
Sbjct: 217 AEPKKGLWQASVTSSTHER 235
>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 584
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +3
Query: 240 RVVRDTPTRPRDTHSRLFGQAASNGPVSPLITDTIRS--NIQF 362
+ V D +DT SR+ + NGP+S L+ D +R NI F
Sbjct: 482 KCVVDIKGEKKDTPSRVVIEGVGNGPLSALV-DALRRQFNISF 523
>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 327 LITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSA 428
L+T + + + GD MNG S A +MN S+
Sbjct: 457 LLTGSWYNGVSIGDCIMNGHSTARKLASLMNSSS 490
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 4 VYARIPSHSRQRAVSTPSVESSY 72
++AR+P + + TP V+SSY
Sbjct: 757 IFARMPKRIYSKILCTPEVDSSY 779
>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 9.0
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +2
Query: 32 GNAQCLPRVLNRPIILNNNGN--LRSIQARRALQDR 133
G + LP+ N P+ N N N L S A A Q+R
Sbjct: 100 GYIEYLPKTFNTPLYFNENDNAFLISTNAYSAAQER 135
>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 183
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/69 (21%), Positives = 33/69 (47%)
Frame = +3
Query: 165 KSCIAEIFNGDMTDGSPKKNGMARQRVVRDTPTRPRDTHSRLFGQAASNGPVSPLITDTI 344
K + ++ N ++ + + R +VR+ T+P +++S+ G + G P T+ +
Sbjct: 46 KRIVKQLKNNELFNRLTLPSQELRDGIVRENQTKPSNSNSQSNGAISIRGIAGP--TNVV 103
Query: 345 RSNIQFGDS 371
N+ G S
Sbjct: 104 IENLAPGTS 112
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,164,588
Number of Sequences: 5004
Number of extensions: 67114
Number of successful extensions: 181
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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