Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3801
(764 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610... 33 0.19
12_02_1261 + 27410921-27413401 31 1.0
12_02_0869 - 23844378-23844689,23844924-23845233,23845322-238454... 30 1.8
10_02_0110 - 5371536-5372882 30 2.3
09_04_0543 - 18442571-18443111,18443232-18443426,18443507-184440... 29 5.4
01_05_0551 + 23169751-23170491 29 5.4
09_06_0059 - 20584196-20584288,20584389-20585055,20585411-205857... 28 7.1
04_01_0176 + 2003707-2004130,2004689-2004861 28 9.4
02_01_0593 + 4408229-4408294,4408764-4409096,4409756-4409794,440... 28 9.4
01_06_0675 + 31092877-31092916,31093349-31093503,31093570-310936... 28 9.4
>01_05_0439 -
22159425-22159520,22160137-22160345,22161028-22161066,
22161196-22161356,22161447-22161518,22162002-22162183,
22162580-22162703,22164196-22164299,22165526-22165725,
22165838-22166069,22166156-22166239,22166329-22166386,
22166724-22166771,22167924-22168081,22168451-22168501,
22168585-22168658,22168760-22168835,22169685-22169729,
22169833-22169899,22169978-22170095,22170580-22170775,
22171551-22171640,22171985-22172039,22172755-22172975,
22173362-22173454,22173608-22173721,22173918-22173981,
22174081-22174181,22174306-22174447,22174528-22174729,
22174883-22174976,22176172-22176348
Length = 1248
Score = 33.5 bits (73), Expect = 0.19
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Frame = +3
Query: 108 KHVELYKIGHGKNR-VPNAPKSCIAEIFNGDMTDG-SPKKNGMARQRVVRDTPTRPRDTH 281
K + + G ++ VPN+P I I G + SP++ R+R+V D + +
Sbjct: 539 KRKSILAVASGASKQVPNSPS--IPTIGGGPKVESLSPRERAAERERMVLDIKVKLQGLW 596
Query: 282 SRLFGQAASNGPVSPLITDTIRSNIQFGDSEMNGGS 389
RL A+ P+S TI + I+ D+E GGS
Sbjct: 597 LRLLRLGATEDPLSSFEYGTILALIE-SDAEGIGGS 631
>12_02_1261 + 27410921-27413401
Length = 826
Score = 31.1 bits (67), Expect = 1.0
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Frame = +3
Query: 156 NAPKSCIAEIFNGDMTDGSPKKNGMARQRVVRDTPTRPRDTHSRLFGQA-ASNGPVSPLI 332
+AP ++ TDG+ K++ A R V+++ + +A +NG
Sbjct: 553 SAPLPKSEDVSLSQPTDGN-KEHASAEVRTVQESYASLEAMVPEMLMKAEVANGTNVAAA 611
Query: 333 TDTIRSNIQFGDSE-----MNGGSPTHSPAKMMNGS----AYSTPSRGEREPAEH*GNP 482
+++++ Q D + G + HS + N + AYSTP + +++ AEH GNP
Sbjct: 612 SNSLKDEGQRADQPSLKKMVPGANVNHSSGEATNSAFPDIAYSTPKKKKKKIAEHFGNP 670
>12_02_0869 -
23844378-23844689,23844924-23845233,23845322-23845447,
23845522-23845727,23845832-23845964,23846045-23846208,
23846856-23846948,23847074-23847196,23847318-23847384,
23847473-23847564,23847667-23847779,23847796-23847845,
23848098-23848189
Length = 626
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -3
Query: 282 SECHAD--ASVCRGRHVGAPCRSSWGCHPSYRH*RFLR 175
SECH + S + +VGAP R+ HP Y H +L+
Sbjct: 221 SECHINHFISTIQSTNVGAPARTVGWRHPGYIHTSYLK 258
>10_02_0110 - 5371536-5372882
Length = 448
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 480 GCLSVRLAPSHLGWVSNKRFRSSSWRGSA*DFR 382
G + RLAP H GW+S +R R + R + D R
Sbjct: 11 GAAAARLAPYHKGWLSRRRRRGRTNRRARNDDR 43
>09_04_0543 -
18442571-18443111,18443232-18443426,18443507-18444045,
18444205-18444375,18444794-18445219
Length = 623
Score = 28.7 bits (61), Expect = 5.4
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Frame = +3
Query: 294 GQAASN--GPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGEREPAE 467
GQA+ + G +P + + QFG S N P G A PS G PA+
Sbjct: 514 GQASFSQFGGAAPFSSFVLPPRNQFGPSASNFPFGMVPP-----GMAIPMPSLGSLAPAK 568
Query: 468 H*GNPITGDGYKSM---NGQMNT 527
G+P T GY+ + G+M T
Sbjct: 569 MAGHPSTMQGYQGLMIPEGEMKT 591
>01_05_0551 + 23169751-23170491
Length = 246
Score = 28.7 bits (61), Expect = 5.4
Identities = 25/82 (30%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Frame = +3
Query: 252 DTPTRPRDTHSRLFGQAASNGPVSPLITDTIRS-NIQFGDSEMNGGSPTHSPAKMMNGSA 428
D T D S QAA+ V + D RS I GD+ P SP K +A
Sbjct: 67 DHRTTDDDDGSNGRDQAATLSDVDRFLFDNFRSLYIHDGDNHQQRRQPPPSPGKFTQPAA 126
Query: 429 YSTPSRGEREPAEH*GNPITGD 494
T S AE +GD
Sbjct: 127 AETSSSRSESVAEDARGTSSGD 148
>09_06_0059 -
20584196-20584288,20584389-20585055,20585411-20585732,
20585862-20586000,20586261-20586322,20586371-20586434,
20586674-20586826,20586952-20587082,20587175-20587336,
20588060-20588264
Length = 665
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +3
Query: 303 ASNGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGERE 458
+++ P S T S I GD++ S TH + NG + TPS+ +RE
Sbjct: 406 STSSPFSLYNCRTASSTINAGDAQACSTSATHIDLENKNGDS-KTPSQDKRE 456
>04_01_0176 + 2003707-2004130,2004689-2004861
Length = 198
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Frame = -2
Query: 445 RLGVE*ALPFIILAGECVGLPPFISE------SPNWM 353
+LG ALPFI+ G C L + E SP WM
Sbjct: 99 QLGCRQALPFIVPTGRCASLAAVVEEISGRRASPPWM 135
>02_01_0593 +
4408229-4408294,4408764-4409096,4409756-4409794,
4409870-4409937,4410024-4410068,4410478-4410655,
4410740-4410871,4410941-4411009,4411258-4411305,
4411498-4411545,4411654-4411763,4412044-4412125,
4412232-4412345
Length = 443
Score = 27.9 bits (59), Expect = 9.4
Identities = 28/94 (29%), Positives = 39/94 (41%)
Frame = +3
Query: 267 PRDTHSRLFGQAASNGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSR 446
P + S +GQAASN +S DT + + EM GGS + +AY+ P R
Sbjct: 182 PAEAPSNAYGQAASN-LLSGSNLDTTINQLM----EMGGGSWDRDKVQRALRAAYNNPER 236
Query: 447 GEREPAEH*GNPITGDGYKSMNGQMNTMTSINGT 548
+ G PIT + GQ T + T
Sbjct: 237 AVE--YLYSGIPITAEVAVPAGGQGANTTEPSST 268
>01_06_0675 +
31092877-31092916,31093349-31093503,31093570-31093677,
31094283-31094487,31094858-31094955,31095052-31095135,
31095227-31095304,31095462-31095554,31095646-31095675,
31095932-31096273,31096353-31096434,31096527-31096622,
31096728-31096907,31097002-31097108,31097207-31097308,
31097611-31097666,31097749-31098002,31098077-31098240,
31098564-31098747,31098825-31098969,31099561-31099661,
31099803-31099870
Length = 923
Score = 27.9 bits (59), Expect = 9.4
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Frame = +3
Query: 93 TYAQFKHVELYKIGHGKNRVPNAPKSCIAEIFNGDMTDGSPKKNGMARQRVVRDTPTRPR 272
TY ++ ++ H N + NAP + + NG + + +K G RVV +
Sbjct: 183 TYTDLPAAKISEMLHS-NSLDNAPTQSLLRVVNGILDESIERKRGEIPHRVVHLLRNVIQ 241
Query: 273 DTHSRLFGQA---ASNGPVSPLITDTIRSNIQFGDSEMNG 383
+ R+ QA + + D RS I+ ++ +NG
Sbjct: 242 EIEHRIGIQADHIRNQNSIIKTREDKYRSKIKALETLVNG 281
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,909,767
Number of Sequences: 37544
Number of extensions: 504351
Number of successful extensions: 1343
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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