Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3799
(452 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0573 - 34815576-34815785,34816117-34816327,34816448-348166... 31 0.57
05_03_0334 - 12550621-12550722,12552038-12552226 29 1.3
05_01_0154 + 1020650-1022050,1022304-1022373,1022496-1022617,102... 29 1.7
04_04_0711 - 27468045-27468264,27468831-27468935,27469431-274694... 29 1.7
03_02_0579 - 9606317-9606892,9607571-9607799,9607902-9608011,960... 29 1.7
08_02_0999 + 23418295-23418615 25 2.0
01_06_0388 + 28927211-28928467 29 2.3
09_04_0377 + 17086775-17088310 28 4.0
06_01_0380 + 2731792-2732097 28 4.0
07_03_0169 + 14670994-14673714,14673799-14673879,14675460-146756... 27 5.3
12_01_0002 - 4477-6144,6571-7440 27 9.3
11_06_0766 - 27115441-27115760,27115878-27116025,27116213-271174... 27 9.3
11_03_0067 - 9535565-9536157,9536446-9536757,9536948-9537212,953... 27 9.3
11_01_0003 - 6099-7766,8193-9062 27 9.3
09_04_0039 + 14023383-14023727 27 9.3
06_03_0871 - 25562767-25563509,25563889-25565776 27 9.3
03_05_0587 - 25878948-25879201,25879290-25879361,25881091-25881451 27 9.3
02_04_0460 - 23118221-23118406,23118417-23118671,23118763-231188... 27 9.3
>03_06_0573 -
34815576-34815785,34816117-34816327,34816448-34816623,
34816701-34816882,34817431-34817580,34817654-34817894
Length = 389
Score = 30.7 bits (66), Expect = 0.57
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -1
Query: 434 CFL*VTAFPGFPAVDELREDVSVLERESPEDV---VSLPGLQQISAQGVL 294
C L A +P VDE+ E+ LE SPED+ V+ L++++ GV+
Sbjct: 266 CLLSADATVSYPNVDEMNEESENLELTSPEDLGVQVASMLLEEVAQGGVV 315
>05_03_0334 - 12550621-12550722,12552038-12552226
Length = 96
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +3
Query: 165 CRDMMPQHNATAQTSPPPYTITTDAQSVAPGDSVEVVIAGKLP-EDTLRGY 314
CR PQ + P P A DSV+VV+ LP E+ LR +
Sbjct: 6 CRIWWPQRRLQPEPLPAPQRFVLFGWLFARTDSVDVVVGAALPQEEILRSF 56
>05_01_0154 +
1020650-1022050,1022304-1022373,1022496-1022617,
1022753-1023031,1023402-1023779,1024079-1024188,
1024394-1024622,1024725-1025303
Length = 1055
Score = 29.1 bits (62), Expect = 1.7
Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 2/119 (1%)
Frame = +3
Query: 102 VMLVMTSRVSEARSTGAP--LSACRDMMPQHNATAQTSPPPYTITTDAQSVAPGDSVEVV 275
++LV+ + V + T A L A R++ H A + + + A+ + PGD V++
Sbjct: 116 LILVVNAAVGVWQETNAEKALEALREIQSDHAAVLRDGD--WLPSLPARDLVPGDIVQLR 173
Query: 276 IAGKLPEDTLRGYLLQARQGDDILGTFSLEDGDVFSQLINCGKAGERSDSQEARHQGKQ 452
+ K+P D +R L + T +E G + + + K + +A Q K+
Sbjct: 174 VGDKVPAD-MRVLRL-------VTSTLRVEQGSLTGETASVNKTAHQVPHDDADIQAKE 224
>04_04_0711 -
27468045-27468264,27468831-27468935,27469431-27469489,
27469566-27470009,27470123-27470187,27470871-27471066,
27471429-27471590
Length = 416
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 138 RSTGAPLSACRDMMPQHNA--TAQTSPPPYTITTDAQSVA 251
R+ P + C + P H+ +A + PPP +I+ A++VA
Sbjct: 18 RNHATPAATCAALAPAHHGHLSASSPPPPSSISAAARAVA 57
>03_02_0579 -
9606317-9606892,9607571-9607799,9607902-9608011,
9608898-9609275,9609380-9609658,9610044-9610168,
9610269-9610335,9610582-9612006
Length = 1062
Score = 29.1 bits (62), Expect = 1.7
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = +3
Query: 237 AQSVAPGDSVEVVIAGKLPEDTLRGYLLQARQGDDILGTFSLEDGDVFSQLINCGKAGER 416
A+ + PGD VE+ + K+P D +R +LQ I T +E G + + + K +
Sbjct: 169 ARDLVPGDIVELRVGDKVPAD-MR--VLQL-----ISSTLRVEQGSLTGETASVNKTSHK 220
Query: 417 SDSQEARHQGKQ 452
+ ++ QGK+
Sbjct: 221 IELEDTDIQGKE 232
>08_02_0999 + 23418295-23418615
Length = 106
Score = 24.6 bits (51), Expect(2) = 2.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 192 ATAQTSPPPYTITTDAQSVAPGDSVEVVIAGKL 290
ATA P T TTD++ APG+S + GK+
Sbjct: 73 ATAVQGSMPMT-TTDSRPTAPGNSPGIGNKGKI 104
Score = 23.0 bits (47), Expect(2) = 2.0
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 72 KVYACLCAAVVMLVMTSRVSEARSTGAPLSACRD 173
KV C C + ++V+ S +EAR A + D
Sbjct: 5 KVVFCTCILIFIVVVISGQAEARRLAAVANGNED 38
>01_06_0388 + 28927211-28928467
Length = 418
Score = 28.7 bits (61), Expect = 2.3
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +3
Query: 249 APGDSVEVVIA---GKLPEDTLRGYLLQARQGDDILGTFSLEDGDVFSQLINCGKAG 410
APG S+ V+A G+L E +R Y +G L SL GDV + + G G
Sbjct: 86 APGGSLADVVARSGGRLDECAIRAYAADVARGLAYLHGMSLVHGDVKGRNVVVGADG 142
>09_04_0377 + 17086775-17088310
Length = 511
Score = 27.9 bits (59), Expect = 4.0
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +3
Query: 93 AAVVMLVMTSRVSEARSTGAPLSACRDMMPQHNATAQTSPPPYTITTD 236
A+VV L SRVS + S S R P+ N SP PY D
Sbjct: 9 ASVVHLPGRSRVSASPSPRRRRSPSRSPSPRRNRRRDRSPSPYRSRRD 56
>06_01_0380 + 2731792-2732097
Length = 101
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 307 RKVSSGSLPAITTSTLSPGATLCASVVMV*GGGEVCAVA 191
R ++ L A+ + ++P AT CA V GGE+ A A
Sbjct: 9 RVAAAAVLLALLVAVVAPPATTCADAARVLLGGELAAAA 47
>07_03_0169 +
14670994-14673714,14673799-14673879,14675460-14675612,
14675910-14676073,14676162-14676309,14676426-14676548,
14676754-14676841,14677493-14677674
Length = 1219
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/70 (22%), Positives = 28/70 (40%)
Frame = +3
Query: 15 STRSSLRAVLQISEEGSIMKVYACLCAAVVMLVMTSRVSEARSTGAPLSACRDMMPQHNA 194
S + L++ LQ S+ ++ Y A + S+GA S C D
Sbjct: 492 SIQEGLKSSLQPSDSAKSLETYTASKAMSAAQDSECNEDDRHSSGAFASGCSDFQVDMMD 551
Query: 195 TAQTSPPPYT 224
+ +PPP++
Sbjct: 552 HSNKNPPPHS 561
>12_01_0002 - 4477-6144,6571-7440
Length = 845
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +3
Query: 165 CRDMMPQHNATAQTSPPPYTITTDAQSVAPGDSVEVVIAGKLPED 299
C D++ Q + A PP ++ A S A V+V+ A +D
Sbjct: 415 CLDLLLQGSHPAPQRPPKLLLSVSAHSDAAASQVKVIPAATTKDD 459
>11_06_0766 -
27115441-27115760,27115878-27116025,27116213-27117417,
27117510-27117753,27120181-27120357
Length = 697
Score = 26.6 bits (56), Expect = 9.3
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +3
Query: 195 TAQTSPPPYTITTDAQSVAPGDSVEVVIAGKLPEDTLRGYLLQARQGDDILGTFSLEDGD 374
T S P T+ + Q+ + G +E+V AG G L + +LG + G+
Sbjct: 17 TTDDSSSPMTVEKEEQAASTG--MEIVKAGNSNAQETGGLSLNYEEARALLGRLEFQKGN 74
Query: 375 VFSQL 389
V + L
Sbjct: 75 VEAAL 79
>11_03_0067 -
9535565-9536157,9536446-9536757,9536948-9537212,
9537810-9538048,9538400-9538568,9539216-9539410,
9539649-9539766,9542140-9542315
Length = 688
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -1
Query: 410 PGFPAVDELREDVSVLERESPEDVVSLPG 324
P PA+D++ + + + ++ PEDVV L G
Sbjct: 83 PSPPAIDDVLDVLPIAGQDIPEDVVPLIG 111
>11_01_0003 - 6099-7766,8193-9062
Length = 845
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +3
Query: 165 CRDMMPQHNATAQTSPPPYTITTDAQSVAPGDSVEVVIAGKLPED 299
C D++ Q + A PP ++ A S A V+V+ A +D
Sbjct: 415 CLDLLLQGSHPAPQRPPKLLLSVSAHSDAAASQVKVIPAATTKDD 459
>09_04_0039 + 14023383-14023727
Length = 114
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 126 VSEARSTGAPLSACRDMMPQHNATAQTSPPPYTITTDAQSVAPGD 260
+ E + GAP +A D M + +T PP + D Q P D
Sbjct: 4 IGEVIAGGAPRAAANDAMVETRLGMETHTPPRFLHHDLQRRLPCD 48
>06_03_0871 - 25562767-25563509,25563889-25565776
Length = 876
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = +3
Query: 147 GAPLSACRDMMPQHNATAQTSPPPYTITTDAQSVAPGDSVEVVIAGKLPEDTLRG 311
GA S C +A A +PPPY +++ P +V G + + L G
Sbjct: 729 GAGASPCGSSSAATSAAAAAAPPPYQAPECLKNLRPNTKWDVYSFGMVLLELLSG 783
>03_05_0587 - 25878948-25879201,25879290-25879361,25881091-25881451
Length = 228
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 342 CRLPAGPAANIRARCPLAAYLRSPPPR 262
C PA PA+ + A P A+ R PP R
Sbjct: 119 CEGPAPPASIVTAPPPPVAFRRKPPAR 145
>02_04_0460 -
23118221-23118406,23118417-23118671,23118763-23118851,
23119527-23119605,23121317-23121484,23121760-23122137
Length = 384
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 336 LPAGPAANIRARCPLAAYLRSPPP 265
LPA PAA++ R P SPPP
Sbjct: 85 LPAAPAADLPPRPPSDPVAASPPP 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,039,731
Number of Sequences: 37544
Number of extensions: 196249
Number of successful extensions: 995
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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