Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3799
(452 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK131302-1|BAD18470.1| 626|Homo sapiens protein ( Homo sapiens ... 53 5e-07
BC000595-1|AAH00595.2| 729|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ... 30 4.3
AF451977-1|AAL49758.1| 1431|Homo sapiens cask-interacting protei... 30 4.3
AB209595-1|BAD92832.1| 737|Homo sapiens DEAD box polypeptide 17... 30 4.3
AB037727-1|BAA92544.1| 1154|Homo sapiens KIAA1306 protein protein. 30 4.3
X96783-1|CAA65579.1| 386|Homo sapiens synaptotagmin V protein. 29 5.6
DQ090951-1|AAY99640.1| 385|Homo sapiens synaptotagmin V protein. 29 5.6
BC046157-1|AAH46157.1| 386|Homo sapiens synaptotagmin V protein. 29 5.6
AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related ... 29 7.4
>AK131302-1|BAD18470.1| 626|Homo sapiens protein ( Homo sapiens
cDNA FLJ16275 fis, clone NT2RI2027157, moderately
similar to Mouse SDR2 mRNA. ).
Length = 626
Score = 52.8 bits (121), Expect = 5e-07
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Frame = +3
Query: 69 MKVYACLCAAVVMLVMTSRVSEARSTGAPLSACRDMMPQHNATAQTSPPPYTITTDAQSV 248
M V ++L+ S V+ + G +C M+P+H + Q S P + I +
Sbjct: 1 MAVSGFTLGTCILLLHISYVANYPN-GKVTQSCHGMIPEHGHSPQ-SVPVHDIYVSQMTF 58
Query: 249 APGDSVEVVIAGKLPEDTLRGYLLQARQGDDI----LGTFSLEDGDVFSQLINC 398
PGD +EV ++G +G+LL+AR +D+ +G+F+L D +V SQL+ C
Sbjct: 59 RPGDQIEVTLSG----HPFKGFLLEARNAEDLNGPPIGSFTLIDSEV-SQLLTC 107
>BC000595-1|AAH00595.2| 729|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
polypeptide 17 protein.
Length = 729
Score = 29.9 bits (64), Expect = 4.3
Identities = 21/79 (26%), Positives = 29/79 (36%)
Frame = +3
Query: 135 ARSTGAPLSACRDMMPQHNATAQTSPPPYTITTDAQSVAPGDSVEVVIAGKLPEDTLRGY 314
A +TG S P TA+ +PPP +T P ++ + P T+RG
Sbjct: 25 ASATGDSASERESAAPAAAPTAE-APPPSVVTRPEPQALPSPAIRAPLPDLYPFGTMRGG 83
Query: 315 LLQARQGDDILGTFSLEDG 371
R D G F G
Sbjct: 84 GFGDRDRDRDRGGFGARGG 102
>AF451977-1|AAL49758.1| 1431|Homo sapiens cask-interacting protein 1
protein.
Length = 1431
Score = 29.9 bits (64), Expect = 4.3
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Frame = +3
Query: 123 RVSEARSTGAPLSACRDMMPQHNATAQT---SPPPYTITTDAQSVAPGDSVEVVIAGKLP 293
RV + S AP A +++ + + PPP + ++A + + + P
Sbjct: 913 RVGRSHSVRAPAGADKNVNRSQSFAVRPRKKGPPPPPPKRSSSALASANLADEPVPDAEP 972
Query: 294 EDTLRGYLLQARQGDDILGT 353
ED L G Q R+ D+ G+
Sbjct: 973 EDGLLGVRAQCRRASDLAGS 992
>AB209595-1|BAD92832.1| 737|Homo sapiens DEAD box polypeptide 17
isoform p82 variant protein.
Length = 737
Score = 29.9 bits (64), Expect = 4.3
Identities = 21/79 (26%), Positives = 29/79 (36%)
Frame = +3
Query: 135 ARSTGAPLSACRDMMPQHNATAQTSPPPYTITTDAQSVAPGDSVEVVIAGKLPEDTLRGY 314
A +TG S P TA+ +PPP +T P ++ + P T+RG
Sbjct: 27 ASATGDSASERESAAPAAAPTAE-APPPSVVTRPEPQALPSPAIRAPLPDLYPFGTMRGG 85
Query: 315 LLQARQGDDILGTFSLEDG 371
R D G F G
Sbjct: 86 GFGDRDRDRDRGGFGARGG 104
>AB037727-1|BAA92544.1| 1154|Homo sapiens KIAA1306 protein protein.
Length = 1154
Score = 29.9 bits (64), Expect = 4.3
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Frame = +3
Query: 123 RVSEARSTGAPLSACRDMMPQHNATAQT---SPPPYTITTDAQSVAPGDSVEVVIAGKLP 293
RV + S AP A +++ + + PPP + ++A + + + P
Sbjct: 636 RVGRSHSVRAPAGADKNVNRSQSFAVRPRKKGPPPPPPKRSSSALASANLADEPVPDAEP 695
Query: 294 EDTLRGYLLQARQGDDILGT 353
ED L G Q R+ D+ G+
Sbjct: 696 EDGLLGVRAQCRRASDLAGS 715
>X96783-1|CAA65579.1| 386|Homo sapiens synaptotagmin V protein.
Length = 386
Score = 29.5 bits (63), Expect = 5.6
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +2
Query: 317 AAGPAGRRHPRDFLARGRRRLLSAHQLR 400
AAG AG RH D LA RR + H LR
Sbjct: 348 AAGGAGLRHWADMLANPRRPIAQWHSLR 375
>DQ090951-1|AAY99640.1| 385|Homo sapiens synaptotagmin V protein.
Length = 385
Score = 29.5 bits (63), Expect = 5.6
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +2
Query: 317 AAGPAGRRHPRDFLARGRRRLLSAHQLR 400
AAG AG RH D LA RR + H LR
Sbjct: 347 AAGGAGLRHWADMLANPRRPIAQWHSLR 374
>BC046157-1|AAH46157.1| 386|Homo sapiens synaptotagmin V protein.
Length = 386
Score = 29.5 bits (63), Expect = 5.6
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +2
Query: 317 AAGPAGRRHPRDFLARGRRRLLSAHQLR 400
AAG AG RH D LA RR + H LR
Sbjct: 348 AAGGAGLRHWADMLANPRRPIAQWHSLR 375
>AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related
tumor marker CA125 protein.
Length = 22152
Score = 29.1 bits (62), Expect = 7.4
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Frame = +3
Query: 102 VMLVMTSRVSEARSTGAPLSACRDMMPQHNATAQTSPPPYTITTDAQS--VAP-GDSVEV 272
++ TS S+A S + +A + PQH +TSP T A + AP SV
Sbjct: 505 ILRATTSSTSKASSWTSESTAQQFSEPQHTQWVETSPSMKTERPPASTSVAAPITTSVPS 564
Query: 273 VIAG--KLPEDTLRGYLLQARQGDDILG 350
V++G L + +G L+ D ++G
Sbjct: 565 VVSGFTTLKTSSTKGIWLEETSADTLIG 592
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,753,432
Number of Sequences: 237096
Number of extensions: 1063235
Number of successful extensions: 4290
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4290
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3758237868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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