Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3799
         (452 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-43|CAJ76962.1|  257|Caenorhabditis elegans Hypothetical p...    28   3.7  
Z99281-42|CAB16505.2|  269|Caenorhabditis elegans Hypothetical p...    28   3.7  
Z81128-1|CAB03398.1|  568|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U80448-9|AAB37822.2|  577|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AF025460-2|AAF02169.3|  545|Caenorhabditis elegans Prion-like-(q...    27   8.4  
AF013953-1|AAC47750.1|  568|Caenorhabditis elegans mom-5 protein.      27   8.4  

>Z99281-43|CAJ76962.1|  257|Caenorhabditis elegans Hypothetical
           protein Y57G11C.3b protein.
          Length = 257

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 195 TAQTSPPPYTITTDAQSVAPGDSVEVVIAGKLPEDTLRG 311
           T    PPP  IT   Q++    +V  +I GK   + +RG
Sbjct: 171 TDSPKPPPSRITLTLQTLQHAKNVAFIICGKQKAEIVRG 209


>Z99281-42|CAB16505.2|  269|Caenorhabditis elegans Hypothetical
           protein Y57G11C.3a protein.
          Length = 269

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 195 TAQTSPPPYTITTDAQSVAPGDSVEVVIAGKLPEDTLRG 311
           T    PPP  IT   Q++    +V  +I GK   + +RG
Sbjct: 183 TDSPKPPPSRITLTLQTLQHAKNVAFIICGKQKAEIVRG 221


>Z81128-1|CAB03398.1|  568|Caenorhabditis elegans Hypothetical
           protein T23D8.1 protein.
          Length = 568

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 359 RESPEDVVSLPGLQQISAQGVLWQLTCDHHLHAIAGSY 246
           ++S  DV    G+  I+ + VL    C HH+H  +GS+
Sbjct: 157 KKSSNDVTF--GVSTIANEVVLSPKKCPHHMHTTSGSH 192


>U80448-9|AAB37822.2|  577|Caenorhabditis elegans Hypothetical
           protein F59A3.8 protein.
          Length = 577

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = +3

Query: 135 ARSTGAPLSACRDMMPQHNATAQTSPPPYTITTDAQSVAPGDSVEVVIAGKLPE 296
           AR    P    R+M  Q +A +       T     Q+ AP +     I GKLP+
Sbjct: 2   ARKGTTPWHESREMHTQDDADSSLKEQEKTTNKKEQTTAPPEKKLPTIPGKLPK 55


>AF025460-2|AAF02169.3|  545|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 41
           protein.
          Length = 545

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
 Frame = +3

Query: 117 TSRVSEARSTGAPLSAC---RDMMPQHNATAQTSPPPYTITTDAQSVAPGDSVEVV 275
           TS  + + ST  P S+    +   P H  +A  S PP  +T+      P  S  +V
Sbjct: 49  TSSSAASSSTSTPSSSSHHKKSSPPHHQKSAAPSAPPRDVTSAHAPPPPASSAPIV 104


>AF013953-1|AAC47750.1|  568|Caenorhabditis elegans mom-5 protein.
          Length = 568

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 359 RESPEDVVSLPGLQQISAQGVLWQLTCDHHLHAIAGSY 246
           ++S  DV    G+  I+ + VL    C HH+H  +GS+
Sbjct: 157 KKSSNDVTF--GVSTIANEVVLSPKKCPHHMHTTSGSH 192


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,385,130
Number of Sequences: 27780
Number of extensions: 142489
Number of successful extensions: 555
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)