Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3793
(580 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 31 0.12
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 27 2.0
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 27 2.6
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 27 2.6
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub... 26 3.5
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 26 3.5
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni... 26 3.5
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 26 4.6
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual 25 6.1
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 25 6.1
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c... 25 8.0
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 31.1 bits (67), Expect = 0.12
Identities = 11/37 (29%), Positives = 25/37 (67%)
Frame = +3
Query: 300 MEFVKLQCNICFSVAEIKNYFMQPIDRLTMIPVLELD 410
++ +L+C C ++ EI N M+P+++L ++ +L L+
Sbjct: 240 LQIEELRCAACETMTEIVNKKMKPLEKLNLLNILNLN 276
>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 180 LFAKRLYIKSKSERYFGRRRTGRSCAWC 263
LF Y+K++S F +RT ++ WC
Sbjct: 533 LFKSLSYLKTESTDPFSNKRTRKAALWC 560
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 26.6 bits (56), Expect = 2.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 336 SVAEIKNYFMQPIDRLTMIPVLELDTCKHQLCSMCIPP 449
S AE++ Y+ + LT + LEL+ H + +M IPP
Sbjct: 611 SAAEMRVYWSFVVGMLTNLGALELERI-HNMLTMFIPP 647
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 26.6 bits (56), Expect = 2.6
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +3
Query: 264 CRRSKWKCSRLKMEFVKLQCNICFSVAEIKNYFMQP--IDRLTMIP 395
C+RSKW+ S +K+ K + I SV K P +D +++IP
Sbjct: 76 CQRSKWEKSDVKVRQTKSKNYIFTSVVLAKKDPKNPSILDHVSLIP 121
>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 462
Score = 26.2 bits (55), Expect = 3.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 171 RKQLFAKRLYIKSKSERYFGRRRTGRSC 254
+K LFA+ Y+ K E+Y R + R C
Sbjct: 129 QKTLFAQEKYVTRKGEKYLQRFQVLRPC 156
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 26.2 bits (55), Expect = 3.5
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +3
Query: 303 EFVKLQCNICFSVAEIKNYFMQPIDRLTMIPVLELD 410
E +KL+ ++ +SV +YF++P R ++P++ D
Sbjct: 613 ELLKLKQDVDYSVTPNGDYFVKPHVRKGLLPIILAD 648
>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
Rad15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 772
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +3
Query: 300 MEFVKLQCNICFSVAEIKNYFMQPIDRLTMIPVLELDTCKHQLCSM 437
+E++K + + +AE F+Q + +T I L C +L S+
Sbjct: 336 VEYLKTRMKVLHVIAETPTSFLQHVKDITFIDKKPLRFCAERLTSL 381
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 25.8 bits (54), Expect = 4.6
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 546 NHVHNVSVYAVNVEMQTFTPAQGTWYFFSFPNLGVCTL 433
+H HN S++ +N+ ++ A+ + F P L +C L
Sbjct: 670 DHRHNFSLHHLNLYYESSFGAKASSLFAFLPQLSLCML 707
>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 25.4 bits (53), Expect = 6.1
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 252 CAWCCRR-SKWKCSRLKMEFVKLQCNI 329
C+ C + SK++C R F L+CN+
Sbjct: 9 CSTCQKNASKYRCPRCDSRFCCLECNL 35
>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 815
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 231 RRRTGRSCAWCCRRSKWKCSRLK 299
RRR R+C C RR K KC L+
Sbjct: 24 RRRVTRACDMC-RRKKIKCDGLR 45
>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 680
Score = 25.0 bits (52), Expect = 8.0
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +1
Query: 445 PQIRKRKKIPCPLCRGESLHFNVYSINRNVVDVI 546
P+ R+ ++ GE HF++Y NR+ +D +
Sbjct: 223 PRSRRDPRLSWKALGGEYCHFHLYKENRDSMDCL 256
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,316,568
Number of Sequences: 5004
Number of extensions: 43938
Number of successful extensions: 138
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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