Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3793
         (580 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0755 - 27462388-27463140                                         31   0.66 
12_02_0656 + 21601782-21601925,21602249-21602460,21602686-216028...    28   6.2  
04_03_0103 + 11288977-11290353,11291962-11292075,11294987-112954...    28   6.2  
05_06_0185 - 26201013-26201429,26201537-26201695,26201774-262026...    27   8.2  
05_06_0183 - 26182481-26182897,26183005-26183163,26183261-261837...    27   8.2  
02_03_0215 + 16505994-16506542,16506803-16507894                       27   8.2  

>03_05_0755 - 27462388-27463140
          Length = 250

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 213 SERYFGRRRTGRSCAWCCRRSKWKCS 290
           S + F  RR  +SC WCC R + +C+
Sbjct: 171 SRQCFDDRRRLQSCCWCCHRRRDQCA 196


>12_02_0656 +
           21601782-21601925,21602249-21602460,21602686-21602813,
           21602905-21602986,21603308-21603406,21603619-21604054,
           21604280-21604350,21604438-21604523,21604740-21604750
          Length = 422

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 555 VAFNHVHNVSVYAVNVEMQTFTPAQGTWY 469
           + F+HV+  + Y V + ++   PA+  WY
Sbjct: 195 LCFSHVNQGNSYIVKIAIKDLVPAEAWWY 223


>04_03_0103 +
           11288977-11290353,11291962-11292075,11294987-11295436,
           11295813-11295910,11296023-11296206,11296979-11297068,
           11301608-11301727,11301812-11302054,11302715-11302988,
           11303237-11303357,11303591-11303849
          Length = 1109

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +3

Query: 330 CFSVAEIKNYFMQPIDRLTMIPVLELDTCK 419
           CFS     N++M+PI+ LT++  +++DT +
Sbjct: 237 CFSTEGTANFYMRPIEGLTVL--VDMDTAE 264


>05_06_0185 -
           26201013-26201429,26201537-26201695,26201774-26202601,
           26203483-26203605
          Length = 508

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -2

Query: 141 RNVRRVFFVSAKRSVQLTCVAFKFQNVSNLQTIGL-TFHD 25
           +NV  + F SAK  ++LTC     +N ++L+ + L T HD
Sbjct: 400 KNVNIIGFCSAKSMIELTC--HILENATSLECLTLDTIHD 437


>05_06_0183 -
           26182481-26182897,26183005-26183163,26183261-26183714,
           26184370-26184485
          Length = 381

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -2

Query: 141 RNVRRVFFVSAKRSVQLTCVAFKFQNVSNLQTIGL-TFHD 25
           +NV  + F SAK  ++LTC     +N ++L+ + L T HD
Sbjct: 273 KNVNIIGFCSAKSMIELTC--HILENATSLECLTLDTIHD 310


>02_03_0215 + 16505994-16506542,16506803-16507894
          Length = 546

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -1

Query: 442 MHIEHN*CLHVSSSNTGIIVNLSIGCIK*FLISATEKQMLHC 317
           M   H   L VSS+N GI+ NLSI       +  T K +L C
Sbjct: 1   MEENHGFVLEVSSNNEGIVRNLSI-----INVGETNKNVLKC 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,630,570
Number of Sequences: 37544
Number of extensions: 275485
Number of successful extensions: 632
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)