Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3793
         (580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024849-1|AAK68546.2|  374|Caenorhabditis elegans Hypothetical ...    32   0.34 
Z77666-12|CAJ43911.2|  896|Caenorhabditis elegans Hypothetical p...    31   0.45 
Z77666-9|CAJ43912.1|  541|Caenorhabditis elegans Hypothetical pr...    31   0.45 
Z77666-8|CAJ43910.1|  493|Caenorhabditis elegans Hypothetical pr...    31   0.45 
Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical pr...    31   0.45 
AF106591-1|AAD47131.2|  710|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z83125-2|CAB05621.2|  391|Caenorhabditis elegans Hypothetical pr...    27   7.3  
AY037796-1|AAK94761.1|  283|Caenorhabditis elegans GLY-17 protein.     27   7.3  
U53337-2|AAA96184.1|  639|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>AC024849-1|AAK68546.2|  374|Caenorhabditis elegans Hypothetical
           protein Y67D8B.1 protein.
          Length = 374

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 300 MEFVKLQCNICFSVAEIKNYFMQPIDRLTMIPVLELDTCKHQLCSMC 440
           M   KL   +CF   ++     +P D   ++PV  L  C H +C +C
Sbjct: 1   MNLEKLSELLCFQCGKLYESITKPDDEAILVPV--LGACLHSICILC 45


>Z77666-12|CAJ43911.2|  896|Caenorhabditis elegans Hypothetical
           protein K08E7.5c protein.
          Length = 896

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +3

Query: 243 GRSCAWC-CRRSKWKCSRLKMEFVKLQCNICFSVAE 347
           GR+C  C CRR   K  RLK   +   C+ C S  E
Sbjct: 699 GRACPSCPCRRRMHKSRRLKRHSINSNCHQCSSAGE 734


>Z77666-9|CAJ43912.1|  541|Caenorhabditis elegans Hypothetical
           protein K08E7.5d protein.
          Length = 541

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +3

Query: 243 GRSCAWC-CRRSKWKCSRLKMEFVKLQCNICFSVAE 347
           GR+C  C CRR   K  RLK   +   C+ C S  E
Sbjct: 344 GRACPSCPCRRRMHKSRRLKRHSINSNCHQCSSAGE 379


>Z77666-8|CAJ43910.1|  493|Caenorhabditis elegans Hypothetical
           protein K08E7.5b protein.
          Length = 493

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +3

Query: 243 GRSCAWC-CRRSKWKCSRLKMEFVKLQCNICFSVAE 347
           GR+C  C CRR   K  RLK   +   C+ C S  E
Sbjct: 296 GRACPSCPCRRRMHKSRRLKRHSINSNCHQCSSAGE 331


>Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical protein
            K08E7.5a protein.
          Length = 1221

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +3

Query: 243  GRSCAWC-CRRSKWKCSRLKMEFVKLQCNICFSVAE 347
            GR+C  C CRR   K  RLK   +   C+ C S  E
Sbjct: 1024 GRACPSCPCRRRMHKSRRLKRHSINSNCHQCSSAGE 1059


>AF106591-1|AAD47131.2|  710|Caenorhabditis elegans Hypothetical
           protein T01A4.3 protein.
          Length = 710

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
 Frame = +3

Query: 216 ERYFGRRRTGRSCAWCCRRSKWKCSRLKMEFVK------LQCNICFSVAEIKN 356
           + Y  +R  GRSC   C  S       KM+  K      ++CN CF     +N
Sbjct: 441 QNYKNKRVDGRSCGETCHASICLFKDKKMKSAKGYDGRKVECNTCFQAVHAEN 493


>Z83125-2|CAB05621.2|  391|Caenorhabditis elegans Hypothetical
           protein T15D6.3 protein.
          Length = 391

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +3

Query: 135 RSAVFGI---PNN*FRKQLFAKRLYIKSKSERYF 227
           RS VFGI   PN    + L A +LYI+S+ E +F
Sbjct: 338 RSCVFGIGDVPNLMKSRALVAHKLYIESEPEAFF 371


>AY037796-1|AAK94761.1|  283|Caenorhabditis elegans GLY-17 protein.
          Length = 283

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +3

Query: 135 RSAVFGI---PNN*FRKQLFAKRLYIKSKSERYF 227
           RS VFGI   PN    + L A +LYI+S+ E +F
Sbjct: 230 RSCVFGIGDVPNLMKSRALVAHKLYIESEPEAFF 263


>U53337-2|AAA96184.1|  639|Caenorhabditis elegans Hypothetical
           protein R02E12.4 protein.
          Length = 639

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +3

Query: 300 MEFVKLQCNICFSVAEIKNYFMQPIDRLTMIPVLELDTCKHQLCSMC 440
           +EF  +QC+ICF V    N+  +P+  L         TCKH +C+ C
Sbjct: 19  LEFEDVQCHICFQV----NH--EPVTFL---------TCKHSICAGC 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,172,044
Number of Sequences: 27780
Number of extensions: 260750
Number of successful extensions: 708
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)