Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3792
         (471 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   0.83 
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    27   1.9  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    26   2.5  
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein...    26   3.3  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -3

Query: 154 LWGSSLDKWCSS*CMPASLRILILGPSGTPSARSLSSPTYGSSAAPTFSS 5
           L  SS+    S    P S    I   S +PS+ S SS T  S ++ +FSS
Sbjct: 321 LSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSS 370


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -3

Query: 79  PSGTPSARSLSSPTYGSSAAPTFSS 5
           PS  P  RS+S PTY S   P FSS
Sbjct: 295 PSPAPP-RSVSQPTYFSQPMPQFSS 318


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
 Frame = +2

Query: 143 RPPQHHH-DPGYCINMSTNKNKNSISLPHLSLFVEETTYF*IRFVRNRRKRQVICRTPKL 319
           RPP+  H D      +  N    S       L  E T      F+  RR+R  + + PKL
Sbjct: 438 RPPKSKHIDDDLSSTVHINSLSGSAGTSDFGLVEETTESASAYFLEARRRRNAVRKDPKL 497

Query: 320 N 322
           +
Sbjct: 498 S 498


>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
           Mad3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 77  WTQDEDPQRSRHTSGTTPLIQRRPPQHHHDPGY 175
           WT D  PQ    TSG   L++R   +   +P Y
Sbjct: 81  WTLDNFPQGETKTSGLVTLLERCTREFVRNPLY 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,858,343
Number of Sequences: 5004
Number of extensions: 33897
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)