Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3787
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0259 - 18851809-18852561,18852659-18852895                       31   0.86 
04_01_0419 + 5555264-5555808,5556582-5556903,5557011-5557271           29   2.6  
12_01_1013 - 10304368-10304403,10304610-10305131                       28   6.1  
07_03_1633 - 28281825-28284005                                         28   8.0  

>06_03_0259 - 18851809-18852561,18852659-18852895
          Length = 329

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 309 VSGLALPLALLKSMGDGNHSPSAGPYA-RLPKRAIKKNC 422
           V+ L+L LA+L S G+G+H P   P A  L  +  +K C
Sbjct: 9   VASLSLLLAVLASTGEGSHQPVVMPVAMELSAKYYRKTC 47


>04_01_0419 + 5555264-5555808,5556582-5556903,5557011-5557271
          Length = 375

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 351 GDGNHSPSAGPYARLPKRAIKKNCRYQHYQ 440
           G G  S  A  Y+R P RA+K +C +  YQ
Sbjct: 124 GGGEGSDKARLYSREPGRAVKYHCNFDLYQ 153


>12_01_1013 - 10304368-10304403,10304610-10305131
          Length = 185

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = -3

Query: 322 AKPLTYQIIEALFEIPTKLSKHYVVFVA*RIRRPVHCIIAMHRCL 188
           A+ LT+ ++ AL ++  +L    V+ V  R   P+H ++ +H  +
Sbjct: 133 AEILTFSLVAALLDVIMQLVVCPVILVLYRDLNPIHAVLIIHELI 177


>07_03_1633 - 28281825-28284005
          Length = 726

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 149 RISLEKLVPACGIQTPVHCYNAMHRTSYPLGYEDYIML 262
           RIS+  ++PACG +  +     +H  +  LG E Y+ +
Sbjct: 234 RISVCSVIPACGGEGKLELGRQVHGFAVKLGVEGYVSI 271


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,363,920
Number of Sequences: 37544
Number of extensions: 394415
Number of successful extensions: 740
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)