Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3786
         (478 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0026 - 189876-190073,190473-190559,190654-190877,190961-19...    29   2.6  
10_07_0019 + 11931519-11932310                                         28   3.4  
01_07_0242 + 42234217-42234320,42234708-42235029,42235377-422357...    28   4.5  

>08_01_0026 -
           189876-190073,190473-190559,190654-190877,190961-191261,
           191369-191467,193465-193602,193691-193879
          Length = 411

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 68  LPHCKRPSR*WTCTSSPTSNPHAPTGATSSSLNTLLGGKKTT 193
           + +CK  S   TC   P S P +P  A S    T  GG  ++
Sbjct: 342 IAYCKANSTFGTCVIPPPSPPPSPRKAPSGGKGTSAGGSSSS 383


>10_07_0019 + 11931519-11932310
          Length = 263

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 382 RCKRWVCRSSPI*RG 338
           RC+RW CRS P  RG
Sbjct: 39  RCRRWWCRSEPTSRG 53


>01_07_0242 +
           42234217-42234320,42234708-42235029,42235377-42235778,
           42235921-42236265,42236785-42236854,42237098-42237173,
           42237309-42237459
          Length = 489

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 199 HEVIRIV-EPSYVGMNNEYRISLAKKGGGCPIMNIHSE 309
           HE ++++ +P   G   EY   +A+  GG PI  I ++
Sbjct: 213 HETVKVICKPCKPGQIQEYASEIARLSGGIPINTIGND 250


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,876,362
Number of Sequences: 37544
Number of extensions: 300689
Number of successful extensions: 844
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)