Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3786
(478 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY496232-1|AAS77218.1| 211|Homo sapiens truncated alpha-1,4-gal... 31 2.1
M90360-1|AAA58670.1| 1015|Homo sapiens protein kinase protein. 29 6.3
BC009973-1|AAH09973.1| 650|Homo sapiens dihydrouridine synthase... 29 8.3
BC008362-1|AAH08362.1| 613|Homo sapiens DUS3L protein protein. 29 8.3
BC004549-1|AAH04549.1| 408|Homo sapiens DUS3L protein protein. 29 8.3
AY684169-1|AAT74627.1| 3052|Homo sapiens REV3-like, catalytic su... 29 8.3
AL512325-1|CAI20998.1| 3130|Homo sapiens REV3-like, catalytic su... 29 8.3
AL365411-1|CAB96955.1| 465|Homo sapiens hypothetical protein, s... 29 8.3
AL136310-2|CAI20509.1| 3130|Homo sapiens REV3-like, catalytic su... 29 8.3
AL080317-2|CAI19192.1| 3130|Homo sapiens REV3-like, catalytic su... 29 8.3
AK023958-1|BAB14740.1| 650|Homo sapiens protein ( Homo sapiens ... 29 8.3
AF179429-1|AAG09403.1| 3052|Homo sapiens DNA polymerase zeta cat... 29 8.3
AF179428-1|AAG09402.1| 3052|Homo sapiens DNA polymerase zeta cat... 29 8.3
AF157476-1|AAD40184.1| 3130|Homo sapiens DNA polymerase zeta cat... 29 8.3
AF091072-1|AAC72941.1| 223|Homo sapiens unknown protein. 29 8.3
AF078695-1|AAC28460.1| 3052|Homo sapiens DNA polymerase zeta cat... 29 8.3
AF071798-1|AAC24009.1| 3130|Homo sapiens DNA polymerase zeta cat... 29 8.3
AF058701-1|AAC24357.1| 3130|Homo sapiens DNA polymerase zeta cat... 29 8.3
AF035537-1|AAB88486.1| 3052|Homo sapiens DNA polymerase zeta pro... 29 8.3
>AY496232-1|AAS77218.1| 211|Homo sapiens truncated
alpha-1,4-galactosyltransferase protein.
Length = 211
Score = 31.1 bits (67), Expect = 2.1
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -1
Query: 154 TCSTCWGVWV*GWRRGTRPSPT 89
TC TCW W G GT P PT
Sbjct: 144 TCWTCWNSWTCGSCSGTHPWPT 165
>M90360-1|AAA58670.1| 1015|Homo sapiens protein kinase protein.
Length = 1015
Score = 29.5 bits (63), Expect = 6.3
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -1
Query: 118 WRRGTRPSPTWSFTMGKLSSTKRVQVSRK 32
W+ GT+ S T+S+ K+SS+K+ + +K
Sbjct: 986 WKSGTKVSRTFSYIKNKMSSSKKSKEKKK 1014
>BC009973-1|AAH09973.1| 650|Homo sapiens dihydrouridine synthase
3-like (S. cerevisiae) protein.
Length = 650
Score = 29.1 bits (62), Expect = 8.3
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 211 RIVEPSYVGMNNEYRISLA-KKGGGCPIMNIHSEY 312
R VE +V +N I L KKGGGC +MN +++
Sbjct: 383 RTVEVDFVDINVGCPIDLVYKKGGGCALMNRSTKF 417
>BC008362-1|AAH08362.1| 613|Homo sapiens DUS3L protein protein.
Length = 613
Score = 29.1 bits (62), Expect = 8.3
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 211 RIVEPSYVGMNNEYRISLA-KKGGGCPIMNIHSEY 312
R VE +V +N I L KKGGGC +MN +++
Sbjct: 346 RTVEVDFVDINVGCPIDLVYKKGGGCALMNRSTKF 380
>BC004549-1|AAH04549.1| 408|Homo sapiens DUS3L protein protein.
Length = 408
Score = 29.1 bits (62), Expect = 8.3
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 211 RIVEPSYVGMNNEYRISLA-KKGGGCPIMNIHSEY 312
R VE +V +N I L KKGGGC +MN +++
Sbjct: 141 RTVEVDFVDINVGCPIDLVYKKGGGCALMNRSTKF 175
>AY684169-1|AAT74627.1| 3052|Homo sapiens REV3-like, catalytic subunit
of DNA polymerase zeta (yeast) protein.
Length = 3052
Score = 29.1 bits (62), Expect = 8.3
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 402 FFGRV-CADVNDGFVEVLPYDAVHKRLERVGVLAVDVHDWAAAALFSQTNSVFVV 241
F GR+ C +V D V + LER L D W A ++ T+S+FV+
Sbjct: 2661 FSGRMPCIEVGDSIVH-----KARETLERAIKLVNDTKKWGARVVYGDTDSMFVL 2710
>AL512325-1|CAI20998.1| 3130|Homo sapiens REV3-like, catalytic subunit
of DNA polymerase zeta (yeast) protein.
Length = 3130
Score = 29.1 bits (62), Expect = 8.3
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 402 FFGRV-CADVNDGFVEVLPYDAVHKRLERVGVLAVDVHDWAAAALFSQTNSVFVV 241
F GR+ C +V D V + LER L D W A ++ T+S+FV+
Sbjct: 2739 FSGRMPCIEVGDSIVH-----KARETLERAIKLVNDTKKWGARVVYGDTDSMFVL 2788
>AL365411-1|CAB96955.1| 465|Homo sapiens hypothetical protein,
similar to (AF091072.1) predicted protein [Homo sapiens]
protein.
Length = 465
Score = 29.1 bits (62), Expect = 8.3
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 211 RIVEPSYVGMNNEYRISLA-KKGGGCPIMNIHSEY 312
R VE +V +N I L KKGGGC +MN +++
Sbjct: 366 RTVEVDFVDINVGCPIDLVYKKGGGCALMNRSTKF 400
>AL136310-2|CAI20509.1| 3130|Homo sapiens REV3-like, catalytic subunit
of DNA polymerase zeta (yeast) protein.
Length = 3130
Score = 29.1 bits (62), Expect = 8.3
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 402 FFGRV-CADVNDGFVEVLPYDAVHKRLERVGVLAVDVHDWAAAALFSQTNSVFVV 241
F GR+ C +V D V + LER L D W A ++ T+S+FV+
Sbjct: 2739 FSGRMPCIEVGDSIVH-----KARETLERAIKLVNDTKKWGARVVYGDTDSMFVL 2788
>AL080317-2|CAI19192.1| 3130|Homo sapiens REV3-like, catalytic subunit
of DNA polymerase zeta (yeast) protein.
Length = 3130
Score = 29.1 bits (62), Expect = 8.3
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 402 FFGRV-CADVNDGFVEVLPYDAVHKRLERVGVLAVDVHDWAAAALFSQTNSVFVV 241
F GR+ C +V D V + LER L D W A ++ T+S+FV+
Sbjct: 2739 FSGRMPCIEVGDSIVH-----KARETLERAIKLVNDTKKWGARVVYGDTDSMFVL 2788
>AK023958-1|BAB14740.1| 650|Homo sapiens protein ( Homo sapiens
cDNA FLJ13896 fis, clone THYRO1001703, weakly similar to
NIFR3-LIKE PROTEIN. ).
Length = 650
Score = 29.1 bits (62), Expect = 8.3
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 211 RIVEPSYVGMNNEYRISLA-KKGGGCPIMNIHSEY 312
R VE +V +N I L KKGGGC +MN +++
Sbjct: 383 RTVEVDFVDINVGCPIDLVYKKGGGCALMNRSTKF 417
>AF179429-1|AAG09403.1| 3052|Homo sapiens DNA polymerase zeta
catalytic subunit variant 2 protein.
Length = 3052
Score = 29.1 bits (62), Expect = 8.3
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 402 FFGRV-CADVNDGFVEVLPYDAVHKRLERVGVLAVDVHDWAAAALFSQTNSVFVV 241
F GR+ C +V D V + LER L D W A ++ T+S+FV+
Sbjct: 2661 FSGRMPCIEVGDSIVH-----KARETLERAIKLVNDTKKWGARVVYGDTDSMFVL 2710
>AF179428-1|AAG09402.1| 3052|Homo sapiens DNA polymerase zeta
catalytic subunit variant 1 protein.
Length = 3052
Score = 29.1 bits (62), Expect = 8.3
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 402 FFGRV-CADVNDGFVEVLPYDAVHKRLERVGVLAVDVHDWAAAALFSQTNSVFVV 241
F GR+ C +V D V + LER L D W A ++ T+S+FV+
Sbjct: 2661 FSGRMPCIEVGDSIVH-----KARETLERAIKLVNDTKKWGARVVYGDTDSMFVL 2710
>AF157476-1|AAD40184.1| 3130|Homo sapiens DNA polymerase zeta
catalytic subunit protein.
Length = 3130
Score = 29.1 bits (62), Expect = 8.3
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 402 FFGRV-CADVNDGFVEVLPYDAVHKRLERVGVLAVDVHDWAAAALFSQTNSVFVV 241
F GR+ C +V D V + LER L D W A ++ T+S+FV+
Sbjct: 2739 FSGRMPCIEVGDSIVH-----KARETLERAIKLVNDTKKWGARVVYGDTDSMFVL 2788
>AF091072-1|AAC72941.1| 223|Homo sapiens unknown protein.
Length = 223
Score = 29.1 bits (62), Expect = 8.3
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 211 RIVEPSYVGMNNEYRISLA-KKGGGCPIMNIHSEY 312
R VE +V +N I L KKGGGC +MN +++
Sbjct: 7 RTVEVDFVDINVGCPIDLVYKKGGGCALMNRSTKF 41
>AF078695-1|AAC28460.1| 3052|Homo sapiens DNA polymerase zeta
catalytic subunit protein.
Length = 3052
Score = 29.1 bits (62), Expect = 8.3
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 402 FFGRV-CADVNDGFVEVLPYDAVHKRLERVGVLAVDVHDWAAAALFSQTNSVFVV 241
F GR+ C +V D V + LER L D W A ++ T+S+FV+
Sbjct: 2661 FSGRMPCIEVGDSIVH-----KARETLERAIKLVNDTKKWGARVVYGDTDSMFVL 2710
>AF071798-1|AAC24009.1| 3130|Homo sapiens DNA polymerase zeta
catalytic subunit protein.
Length = 3130
Score = 29.1 bits (62), Expect = 8.3
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 402 FFGRV-CADVNDGFVEVLPYDAVHKRLERVGVLAVDVHDWAAAALFSQTNSVFVV 241
F GR+ C +V D V + LER L D W A ++ T+S+FV+
Sbjct: 2739 FSGRMPCIEVGDSIVH-----KARETLERAIKLVNDTKKWGARVVYGDTDSMFVL 2788
>AF058701-1|AAC24357.1| 3130|Homo sapiens DNA polymerase zeta
catalytic subunit protein.
Length = 3130
Score = 29.1 bits (62), Expect = 8.3
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 402 FFGRV-CADVNDGFVEVLPYDAVHKRLERVGVLAVDVHDWAAAALFSQTNSVFVV 241
F GR+ C +V D V + LER L D W A ++ T+S+FV+
Sbjct: 2739 FSGRMPCIEVGDSIVH-----KARETLERAIKLVNDTKKWGARVVYGDTDSMFVL 2788
>AF035537-1|AAB88486.1| 3052|Homo sapiens DNA polymerase zeta protein.
Length = 3052
Score = 29.1 bits (62), Expect = 8.3
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 402 FFGRV-CADVNDGFVEVLPYDAVHKRLERVGVLAVDVHDWAAAALFSQTNSVFVV 241
F GR+ C +V D V + LER L D W A ++ T+S+FV+
Sbjct: 2661 FSGRMPCIEVGDSIVH-----KARETLERAIKLVNDTKKWGARVVYGDTDSMFVL 2710
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,654,823
Number of Sequences: 237096
Number of extensions: 1605543
Number of successful extensions: 4087
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4086
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4213781852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -