Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3785
(506 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 28 0.70
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1... 28 0.70
SPAC17C9.13c |cut8||tethering factor for nuclear proteasome Cut8... 27 1.6
SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr... 26 2.8
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 26 3.7
SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|... 25 4.9
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ... 25 4.9
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 25 6.5
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 25 6.5
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 25 8.6
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 8.6
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 28.3 bits (60), Expect = 0.70
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 138 CSLNTHFKKKKILSADFRQSNYGIVLKT 55
C LN++F +K ++ DF +NY V T
Sbjct: 2050 CQLNSNFFEKILVDMDFNDNNYRTVANT 2077
>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 486
Score = 28.3 bits (60), Expect = 0.70
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = -1
Query: 224 VRTCFKKNFFFSNYNAQNKIVHFEYNNMYVL 132
+RT F +N F SNY +++I+ ++Y+N+ L
Sbjct: 5 IRTLFIRNRF-SNYRLRSQIIKYKYSNVSYL 34
>SPAC17C9.13c |cut8||tethering factor for nuclear proteasome
Cut8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 27.1 bits (57), Expect = 1.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 233 LPPVRTCFKKNFFFSNYNAQNKIVH 159
LPP TCF+KN F +A +VH
Sbjct: 126 LPPYSTCFEKNITF--LDAATNVVH 148
>SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr
3|||Manual
Length = 220
Score = 26.2 bits (55), Expect = 2.8
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 126 YSKNIHIIIFKMNNFILSIVVRKKKVFFKASTY 224
Y NI++ FK+ F S V V F+ TY
Sbjct: 62 YENNIYMRTFKLRPFAKSGVTNSSNVVFQMKTY 94
>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 3.7
Identities = 13/56 (23%), Positives = 26/56 (46%)
Frame = -1
Query: 317 TLQTETHYCFMAEIGWVVVPIRADSQEVLPPVRTCFKKNFFFSNYNAQNKIVHFEY 150
T+ +CF +G + P+R +Q++ P++ + F + + Q HF Y
Sbjct: 241 TVSNLKRFCFSESLGHIFAPLRFQNQQL--PLQHVYAFLFSIAYRDNQVDTAHFLY 294
>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 25.4 bits (53), Expect = 4.9
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 90 NPQIIFSSS*SEYSKNIHIIIFKMNNFILSIVVRKK 197
+P+ + + + K++ ++FKMN+ IVV KK
Sbjct: 9 SPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKK 44
>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 4.9
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = -2
Query: 85 PIELRNRAQNIIISCQQPFSFKLRPS 8
P+ RN+ +N++ +C+ +F ++PS
Sbjct: 325 PVFQRNKGRNVLPACRDFAAFDIKPS 350
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 25.0 bits (52), Expect = 6.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 257 IRADSQEVLPPVRTCFKKNFFFSNY 183
I+AD+Q++LP + T + F Y
Sbjct: 881 IKADAQKLLPQILTAIHSQYSFRGY 905
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 419 HQVGCELVHPSNKKNSRGGP 478
+ VG +LVHP N KN+ P
Sbjct: 409 YSVGYKLVHPENAKNTFDHP 428
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 24.6 bits (51), Expect = 8.6
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 261 YHHPAYFCHEAVMRFGLKGGAAVVTILETLELIS*GG 371
+ P+ F E V+ L GG AVV + TLE I G
Sbjct: 87 FKKPSSFTGEDVVELQLHGGTAVVDV--TLEAIKQSG 121
>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 308
Score = 24.6 bits (51), Expect = 8.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 437 AHSPPGVKWLLEPIDIYNVNAPPTLR 360
A PP +K P+DI N++A L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,154,330
Number of Sequences: 5004
Number of extensions: 43963
Number of successful extensions: 102
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -