Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3785
         (506 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40942-6|AAP68937.1|  709|Caenorhabditis elegans High temperatur...    28   4.5  
U40942-5|AAC47068.1|  729|Caenorhabditis elegans High temperatur...    28   4.5  
AY204206-1|AAO39207.1|  477|Caenorhabditis elegans nuclear recep...    28   4.5  
AY070228-1|AAL55425.1|  729|Caenorhabditis elegans HID-1 protein.      28   4.5  
AF039048-15|AAK68332.2|  477|Caenorhabditis elegans Nuclear horm...    28   4.5  
AF039048-14|AAM29674.1|  435|Caenorhabditis elegans Nuclear horm...    28   4.5  

>U40942-6|AAP68937.1|  709|Caenorhabditis elegans High
           temperature-induced dauerformation protein 1, isoform b
           protein.
          Length = 709

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +3

Query: 90  NPQIIFSSS*SEYSKNIHIIIFKMNNFILSIVVRKKKVFFKAS 218
           NPQ++FS    E   N+    F  N+ ++  ++RK+ VF++ S
Sbjct: 490 NPQLVFSLL--EVFNNVIQYQFDGNSNLIYTIIRKRNVFYQLS 530


>U40942-5|AAC47068.1|  729|Caenorhabditis elegans High
           temperature-induced dauerformation protein 1, isoform a
           protein.
          Length = 729

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +3

Query: 90  NPQIIFSSS*SEYSKNIHIIIFKMNNFILSIVVRKKKVFFKAS 218
           NPQ++FS    E   N+    F  N+ ++  ++RK+ VF++ S
Sbjct: 490 NPQLVFSLL--EVFNNVIQYQFDGNSNLIYTIIRKRNVFYQLS 530


>AY204206-1|AAO39207.1|  477|Caenorhabditis elegans nuclear receptor
           NHR-117 protein.
          Length = 477

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 29  KRLLTRYYYVLSTIP*FDWRKSADNIFFFLK*VFKEHTYYYIQNEQFYFE 178
           KR   +  +V S     D+ + + ++ F+    F+E  Y++I  E FY E
Sbjct: 318 KRKCGKKQFVFSNNILLDYDEMSSDLSFWSNYTFEEMKYFFIPTEMFYDE 367


>AY070228-1|AAL55425.1|  729|Caenorhabditis elegans HID-1 protein.
          Length = 729

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +3

Query: 90  NPQIIFSSS*SEYSKNIHIIIFKMNNFILSIVVRKKKVFFKAS 218
           NPQ++FS    E   N+    F  N+ ++  ++RK+ VF++ S
Sbjct: 490 NPQLVFSLL--EVFNNVIQYQFDGNSNLIYTIIRKRNVFYQLS 530


>AF039048-15|AAK68332.2|  477|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 117, isoform b protein.
          Length = 477

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 29  KRLLTRYYYVLSTIP*FDWRKSADNIFFFLK*VFKEHTYYYIQNEQFYFE 178
           KR   +  +V S     D+ + + ++ F+    F+E  Y++I  E FY E
Sbjct: 318 KRKCGKKQFVFSNNILLDYDEMSSDLSFWSNYTFEEMKYFFIPTEMFYDE 367


>AF039048-14|AAM29674.1|  435|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 117, isoform a protein.
          Length = 435

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 29  KRLLTRYYYVLSTIP*FDWRKSADNIFFFLK*VFKEHTYYYIQNEQFYFE 178
           KR   +  +V S     D+ + + ++ F+    F+E  Y++I  E FY E
Sbjct: 276 KRKCGKKQFVFSNNILLDYDEMSSDLSFWSNYTFEEMKYFFIPTEMFYDE 325


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,166,326
Number of Sequences: 27780
Number of extensions: 257656
Number of successful extensions: 525
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)