Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3782
         (469 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    28   0.82 
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    27   1.4  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   4.4  
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.6  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   7.6  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    25   7.6  
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    25   7.6  

>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 27.9 bits (59), Expect = 0.82
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 284 AMLDALGLILYRPNSTQLQVLRNSGKCKSAA 376
           ++   L +IL  PNS++LQ LR  G C + +
Sbjct: 544 SLFSTLRIILEHPNSSRLQKLRAPGLCPNGS 574


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 3   HGQHNNYERASASDRHDEWPLNLSLRGTLAKG 98
           HG+ N Y R + S    E P N +++  LA+G
Sbjct: 42  HGKFNTYSRGNISIVFGEAPSNSNIKDCLAEG 73


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 305 LILYRPNSTQLQVLRNSGKCKSAAAGENG 391
           L LYRPNS  L+   +  +  S ++GE G
Sbjct: 467 LALYRPNSLALKNQSSHRRNSSTSSGETG 495


>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 602

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 380 GENGMALVQVRDVMHHMLQ 436
           G NG+A+V + D +H  LQ
Sbjct: 575 GSNGLAIVSIIDELHKSLQ 593


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 34  PQVTGTMNGHSTSHSVVHSQKAYTDTRHQH 123
           P+V+GTM  + +  S  H+ K    T + H
Sbjct: 599 PRVSGTMEDYDSRESTGHTIKELRSTPNSH 628


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = +2

Query: 77  PWYTRKRLTPIPDINTTGNHTPYKVQKALVENTMVPCINSKPYQYTELLMTLPDLASHFF 256
           P  T    TPIP  +++G   P  V+   V    V  +NS   +  EL  T+ D    + 
Sbjct: 49  PLETASSSTPIPSSSSSGVLNPSSVRGKPVACLFVASLNSSRSE-EELTATVKDYFQQWG 107

Query: 257 P 259
           P
Sbjct: 108 P 108


>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +2

Query: 263 VSLTTCRAMLDALGLILYRPNSTQLQVLRNSGKCKSAAAGENGMALVQV 409
           ++L+TC A   A  L+LY  N+T  + L       +  A ENG+A + V
Sbjct: 62  LTLSTCTAFDGANDLMLYISNNTFDEALPLDN--FTITASENGLATIFV 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,680,368
Number of Sequences: 5004
Number of extensions: 29166
Number of successful extensions: 80
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)