Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3782
(469 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0062 + 20370608-20370977,20371062-20371541,20371661-203717... 30 1.1
02_04_0589 - 24117688-24119282,24119881-24119908,24120004-241200... 28 3.3
04_04_0961 + 29715938-29716034,29716918-29717133,29717438-297177... 28 4.3
12_01_0083 - 670613-670616,673149-674077,674652-674818,675520-67... 27 5.7
11_01_0082 - 625869-627065 27 5.7
06_02_0034 - 10800691-10802215,10802294-10802828,10802902-10803397 27 5.7
01_01_0348 + 2769295-2769660,2770082-2770192,2770284-2770358,277... 27 5.7
06_03_0081 - 16361334-16361708,16362115-16362339,16362433-163625... 27 7.5
09_03_0123 - 12512116-12512442,12512742-12512846,12512928-125130... 27 10.0
03_06_0538 + 34591897-34593703,34595436-34595506,34596328-34598775 27 10.0
01_05_0711 - 24495399-24495595,24495733-24495826,24495906-244959... 27 10.0
01_05_0003 - 16841745-16841912,16842005-16842259,16842938-168430... 27 10.0
>03_05_0062 +
20370608-20370977,20371062-20371541,20371661-20371731,
20371836-20371912,20372076-20372223,20372346-20372507,
20372743-20372940
Length = 501
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -1
Query: 301 ERVEHGAAGGERDAREEVAGEVRQGHQQLRVLVGLRIDARHHCVFH 164
++++ G+ GE++ R EV R H+ L LVG + HH + +
Sbjct: 196 KQLKVGSGQGEKEFRAEVDTISRVHHRHLVTLVGYSVTEHHHLLVY 241
>02_04_0589 -
24117688-24119282,24119881-24119908,24120004-24120089,
24120196-24120220,24121188-24121326,24122344-24122567,
24122674-24122691
Length = 704
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 187 HQFEALPVHGAADDPAGP 240
+ F+AL GAA+DPAGP
Sbjct: 533 YHFKALAFRGAANDPAGP 550
>04_04_0961 +
29715938-29716034,29716918-29717133,29717438-29717776,
29718247-29719274,29719465-29719551,29719636-29720043,
29720394-29720558,29720742-29721036,29721131-29721345,
29721838-29722143,29722474-29722537,29722644-29722883,
29722959-29723062
Length = 1187
Score = 27.9 bits (59), Expect = 4.3
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +2
Query: 248 HFFPRVSLTTCRAMLDALGLILYRPNSTQLQVLRNSGKCKSAAAGENGMALVQVRDVMHH 427
H R+ T +A L GL+ NST+LQ L+ + S + AL+ + +M
Sbjct: 9 HVLARIPETAQQAFL-RWGLLRDSSNSTKLQHLQEWQEMYSPCFWMDAFALIHLIFIMSI 67
Query: 428 MLQFKY 445
++QF Y
Sbjct: 68 LVQFLY 73
>12_01_0083 -
670613-670616,673149-674077,674652-674818,675520-675628
Length = 402
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 31 PPQVTGTMNGHSTSHSVVHSQKAY 102
PP G MN TS++VVH Y
Sbjct: 279 PPPFAGCMNAEITSYTVVHGTTIY 302
>11_01_0082 - 625869-627065
Length = 398
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 31 PPQVTGTMNGHSTSHSVVHSQKAY 102
PP G MN TS++VVH Y
Sbjct: 199 PPPFAGCMNAEITSYTVVHGTTIY 222
>06_02_0034 - 10800691-10802215,10802294-10802828,10802902-10803397
Length = 851
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +1
Query: 4 TANTTTMNVPPQV-TGTMNGHSTSHSVVHSQKAY 102
T + +N P V G +GH HSV+H K Y
Sbjct: 708 TYSQAGLNPPGGVWQGNSDGHGVGHSVMHDNKRY 741
>01_01_0348 +
2769295-2769660,2770082-2770192,2770284-2770358,
2770566-2770626,2770853-2770926,2771004-2771108,
2771475-2771582,2771681-2771784,2771939-2772088,
2772163-2772286,2772746-2772925
Length = 485
Score = 27.5 bits (58), Expect = 5.7
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 155 KALVENTMVPCINSKPYQYTELLMTLPDLASHFFPRVSLTTCRAMLDALGLI 310
KAL+ ++++P + + ++TLP L H R S RA L L I
Sbjct: 3 KALLSSSLLPSLQPRAAAARLPMLTLPSLRRHGGRRASACRVRASLHGLDSI 54
>06_03_0081 -
16361334-16361708,16362115-16362339,16362433-16362548,
16362613-16362699,16363059-16363458
Length = 400
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -1
Query: 301 ERVEHGAAGGERDAREEVAGEVRQGHQQLRVLVGLRIDARHHCVFH 164
++++ G+ GER+ + EV R H+ L LVG I A H + +
Sbjct: 75 KQLKAGSGQGEREFQAEVEIISRVHHRHLVSLVGYCIAAHHRMLIY 120
>09_03_0123 -
12512116-12512442,12512742-12512846,12512928-12513091,
12513282-12513480,12514368-12514585,12514674-12514743
Length = 360
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -1
Query: 280 AGGERDAREEVAGEVRQGHQQLRVLVGLRIDARHHCVFH 164
A GER+ R E+ R H L L+G D +H V +
Sbjct: 111 ADGEREFRVEIDILSRLDHPNLVTLIGYCADGKHRFVVY 149
>03_06_0538 + 34591897-34593703,34595436-34595506,34596328-34598775
Length = 1441
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -1
Query: 301 ERVEHGAAGGERDAREEVAGEVRQGHQQLRVLVGLRIDARHHCVFH 164
+R+E A G+R+ EV R H+ L L+G + HH + +
Sbjct: 1186 KRLEKMAEDGQREFNREVRVIARTHHRNLLRLLGFCNEGIHHLLVY 1231
>01_05_0711 -
24495399-24495595,24495733-24495826,24495906-24495986,
24496130-24496178,24496281-24496366,24496452-24496679,
24496797-24496835,24496911-24497000,24497093-24497155,
24497233-24497302,24497400-24497446,24497544-24497606,
24497702-24497752,24497851-24497934,24498075-24498139,
24498243-24498299,24498409-24498526,24498624-24498674,
24499100-24499186,24499272-24499351,24500663-24500780
Length = 605
Score = 26.6 bits (56), Expect = 10.0
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +1
Query: 46 GTMNGH--STSHSVVHSQKAYTDTRHQH 123
G+ NGH ST HS+ S AYT T HQ+
Sbjct: 556 GSCNGHVVSTKHSL--SNGAYTSTVHQN 581
>01_05_0003 -
16841745-16841912,16842005-16842259,16842938-16843085,
16843740-16843854,16844294-16844465,16844481-16844617,
16844738-16844792
Length = 349
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 4 TANTTTMNVPPQVTGTMNGHSTSH 75
T+N T+N+P QVTG + + T H
Sbjct: 282 TSNGGTINLPDQVTGEIQYNLTEH 305
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,109,842
Number of Sequences: 37544
Number of extensions: 221465
Number of successful extensions: 820
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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