Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3782
         (469 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical pr...    31   0.54 
Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical pr...    31   0.54 
Z78543-3|CAB01755.2|  772|Caenorhabditis elegans Hypothetical pr...    31   0.54 
Z46787-5|CAA86743.1|  409|Caenorhabditis elegans Hypothetical pr...    27   8.9  
L19249-1|AAC37167.1|  303|Caenorhabditis elegans homeobox protei...    27   8.9  
L14429-3|AAA28218.1|  305|Caenorhabditis elegans C.elegans homeo...    27   8.9  

>Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical
           protein F29G6.3c protein.
          Length = 1453

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 10  NTTTMNVPPQVTGTMNGHSTSHSVVHSQKAYTDTRHQH 123
           +  T+    Q T  M  H  SH+V H +  + ++ H+H
Sbjct: 17  SAVTLPAVGQTTTIMEHHQESHTVFHQESHHVESHHEH 54


>Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical
           protein F29G6.3b protein.
          Length = 1785

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 10  NTTTMNVPPQVTGTMNGHSTSHSVVHSQKAYTDTRHQH 123
           +  T+    Q T  M  H  SH+V H +  + ++ H+H
Sbjct: 17  SAVTLPAVGQTTTIMEHHQESHTVFHQESHHVESHHEH 54


>Z78543-3|CAB01755.2|  772|Caenorhabditis elegans Hypothetical
           protein F29G6.3a protein.
          Length = 772

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 10  NTTTMNVPPQVTGTMNGHSTSHSVVHSQKAYTDTRHQH 123
           +  T+    Q T  M  H  SH+V H +  + ++ H+H
Sbjct: 17  SAVTLPAVGQTTTIMEHHQESHTVFHQESHHVESHHEH 54


>Z46787-5|CAA86743.1|  409|Caenorhabditis elegans Hypothetical
           protein C16C10.5 protein.
          Length = 409

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 201 GFELMQGTIVFSTNAFCTLYGVWLPVVLMSGIGVSLLRVYHGVRG 67
           G+ +M G ++     F  L+GV  P ++ +GI      VY+GV G
Sbjct: 223 GYLIMMGALL----GFHVLFGVSQPTLMDAGILFMFYGVYYGVLG 263


>L19249-1|AAC37167.1|  303|Caenorhabditis elegans homeobox protein
           protein.
          Length = 303

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 306 SFSTGLTQPNFKFCATLASASRRPPAR 386
           S STG+  PN  F AT+   +  PP++
Sbjct: 41  STSTGMLSPNLPFSATIPRVNLFPPSQ 67


>L14429-3|AAA28218.1|  305|Caenorhabditis elegans C.elegans homeobox
           protein 23 protein.
          Length = 305

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 306 SFSTGLTQPNFKFCATLASASRRPPAR 386
           S STG+  PN  F AT+   +  PP++
Sbjct: 43  STSTGMLSPNLPFSATIPRVNLFPPSQ 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,524,556
Number of Sequences: 27780
Number of extensions: 169652
Number of successful extensions: 526
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)