Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3777
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0889 + 7426680-7427396,7428073-7428222,7429296-7429601           32   0.48 
05_01_0470 - 3747783-3748097,3749433-3750305                           31   0.64 
06_03_0784 - 24557089-24557198,24557296-24560725                       30   1.5  
03_05_0608 - 26086437-26086892,26091253-26091921                       30   1.5  
06_03_0722 - 23869981-23870250                                         30   2.0  
05_05_0186 + 23071429-23072034,23072182-23072331,23073247-23073552     29   4.5  
03_04_0049 - 16814121-16814515,16815659-16815788,16815905-168159...    29   4.5  
07_03_1196 + 24714626-24714649,24715034-24715297                       28   6.0  
02_05_1331 + 35736543-35736638,35737407-35737525,35737670-357377...    28   6.0  
12_02_0365 + 18045340-18045783                                         28   7.9  
06_01_1083 - 8859190-8859450,8859555-8859626                           28   7.9  
02_05_0039 + 25335690-25335883,25335984-25336131,25337292-253373...    28   7.9  

>07_01_0889 + 7426680-7427396,7428073-7428222,7429296-7429601
          Length = 390

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = +1

Query: 217 VVMTLLSFGGGVLLSTTFMHVMPEVQENIEN--LQARNILQEFDFS 348
           V   + +F  GV+L+T F+H++P+  +N+ +  L A    +EF F+
Sbjct: 83  VFFLVKAFAAGVILATGFIHILPDAFDNLTDDCLPAGGPWKEFPFA 128


>05_01_0470 - 3747783-3748097,3749433-3750305
          Length = 395

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
 Frame = +1

Query: 214 RVVMTLLSFGGGVLLSTTFMHVMPEVQENIENLQARNILQEFDFSLTPLLTCCGFFIMYL 393
           R ++ +  +  GV+LST+ +HV+P+    + +          DF    L +  G  +  L
Sbjct: 62  RGLLLVKCYAAGVILSTSLVHVLPDAHAALADCAVATRRPWRDFPFAGLFSLVGALLALL 121

Query: 394 IEELVHIYI----HHREKNNGQT 450
           ++     ++    HH+    G++
Sbjct: 122 VDLSASSHLEAHGHHQHAEEGES 144


>06_03_0784 - 24557089-24557198,24557296-24560725
          Length = 1179

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
 Frame = +1

Query: 79  IVLAKGISMVVLFCASMICGLIPQIIARKFRWLSVEDAGTFKSTNRVVMTLLSFGGGVLL 258
           I LA G+  VV     ++   +   I+ ++RW S  D G  K    +  TLL  G     
Sbjct: 4   IPLATGVGWVVSPVIKLMFEKVQSYISTQYRWQSNLDDGLKKLETILTETLLVVGTAERR 63

Query: 259 STTFMHVMPEVQENIENL-QARNILQEFDFSL 351
            T   +    + +  + +  A +IL EFD+ L
Sbjct: 64  RTLDFNQQALLHQLKDAVYDAEDILDEFDYML 95


>03_05_0608 - 26086437-26086892,26091253-26091921
          Length = 374

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 235 SFGGGVLLSTTFMHVMPEVQENIEN-LQARNILQEFDFS 348
           +F  GV+L+T +MHV+P+   N+ +    R    EF F+
Sbjct: 101 AFASGVILATGYMHVLPDAFNNLTSPCLPRKPWSEFPFA 139


>06_03_0722 - 23869981-23870250
          Length = 89

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +3

Query: 174 ALRRRRGDVQVYEPGGDDSALLRRRCAALNDFHARHA*SPR 296
           A+RR R D+ +  PG  + A + RRCAA+ + H R    PR
Sbjct: 7   AMRRLR-DL-LAPPGESELARMYRRCAAIEELHRRKRRGPR 45


>05_05_0186 + 23071429-23072034,23072182-23072331,23073247-23073552
          Length = 353

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +1

Query: 217 VVMTLLSFGGGVLLSTTFMHVMPEVQENIEN 309
           V +++ +F GGV+L+T  +H++P   E + +
Sbjct: 81  VFLSVKAFAGGVILATGLVHILPAAFEALSS 111


>03_04_0049 -
           16814121-16814515,16815659-16815788,16815905-16815963,
           16816610-16817102
          Length = 358

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 28/108 (25%), Positives = 43/108 (39%)
 Frame = +1

Query: 76  GIVLAKGISMVVLFCASMICGLIPQIIARKFRWLSVEDAGTFKSTNRVVMTLLSFGGGVL 255
           G+V AK   + V+F  ++  G+ P  +    RW    DA     T         F GGV 
Sbjct: 55  GLVAAKLWCLAVVFAGTLAGGVSPYFM----RW---NDAFLALGTQ--------FAGGVF 99

Query: 256 LSTTFMHVMPEVQENIENLQARNILQEFDFSLTPLLTCCGFFIMYLIE 399
           L T  MH + +  E   +L     L    +    +L C G+ +  L +
Sbjct: 100 LGTAMMHFLADANETFADL-----LPGTAYPFAFMLACAGYVLTMLAD 142


>07_03_1196 + 24714626-24714649,24715034-24715297
          Length = 95

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
 Frame = -3

Query: 246 ASEGEQSHHHPVRRL---ERPRVF 184
           A EGE+ HHH  RR    +RP VF
Sbjct: 52  ADEGEKYHHHAFRRFLGTQRPEVF 75


>02_05_1331 + 35736543-35736638,35737407-35737525,35737670-35737715,
            35738117-35738172,35738452-35738547,35738844-35738961,
            35739406-35739672,35740023-35740124,35740302-35740659,
            35740750-35740863,35741045-35741676,35741895-35742103,
            35742597-35742819,35743419-35743538,35743888-35743914,
            35744281-35745045,35745431-35748511
          Length = 2142

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 548  GDSIPDSVEFLASLLCPSVQRLLRTLKFLTSRSV 447
            GD  PD +E L S +  + + ++  L FL +R +
Sbjct: 1282 GDQFPDEIEKLWSTVASNTRNIIPVLNFLITRGI 1315


>12_02_0365 + 18045340-18045783
          Length = 147

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 244 GGVLLSTTFMHVMPEVQENIENLQ 315
           GGVL+  T   V+P VQ N E L+
Sbjct: 67  GGVLVERTIKEVLPAVQRNKEGLE 90


>06_01_1083 - 8859190-8859450,8859555-8859626
          Length = 110

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -2

Query: 505 CVPLCSGSCARSNF*PVDLSVHYSSLCDECICAP 404
           C P C+G C+ + +    L+   +  C +C+C P
Sbjct: 52  CSPKCAGRCSNTQYKKACLT-FCNKCCAKCLCVP 84


>02_05_0039 +
           25335690-25335883,25335984-25336131,25337292-25337349,
           25337652-25338116,25338435-25338575,25338694-25339934
          Length = 748

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 436 NNGQTDLLVRNLSVRKSRCTEGHSNEAKNSTESGIE 543
           + G  D LVRN+SV     +   +NE  NST +G E
Sbjct: 180 DRGDVDYLVRNISVDNGYMSV--TNEQNNSTSNGTE 213


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,637,156
Number of Sequences: 37544
Number of extensions: 424589
Number of successful extensions: 1314
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1312
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)