Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3777
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical p...    73   1e-13
U42437-4|AAA83498.2|  349|Caenorhabditis elegans Hypothetical pr...    56   3e-08
Z70306-5|CAO82011.1|  337|Caenorhabditis elegans Hypothetical pr...    54   1e-07
Z70306-4|CAH04694.1|  363|Caenorhabditis elegans Hypothetical pr...    54   1e-07
AL032648-3|CAA21695.1|  319|Caenorhabditis elegans Hypothetical ...    50   2e-06
AF100659-8|AAC68966.1|  688|Caenorhabditis elegans Hypothetical ...    33   0.25 
Z50863-1|CAA90736.3|  353|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U28944-12|AAA68371.2|  363|Caenorhabditis elegans Hypothetical p...    29   2.3  
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    28   5.4  
AC024808-3|AAK29925.1|  183|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z96047-6|CAB09416.1|  922|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AL021472-4|CAA16301.1|  149|Caenorhabditis elegans Hypothetical ...    28   7.1  
AF024614-1|AAB97161.1|  922|Caenorhabditis elegans ADAM 10 protein.    28   7.1  
U41278-4|AAK31513.3|  928|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AF100670-2|AAN73857.3|  554|Caenorhabditis elegans Hypothetical ...    27   9.4  

>U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical
           protein F55F8.9 protein.
          Length = 477

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 38/114 (33%), Positives = 66/114 (57%), Gaps = 2/114 (1%)
 Frame = +1

Query: 85  LAKGISMVVLFCASMICGLIPQIIARKFRW--LSVEDAGTFKSTNRVVMTLLSFGGGVLL 258
           + K + M V+F  ++I GL P  +  K R    + + +   K  + V+  L  F GGV L
Sbjct: 5   ILKLVLMFVMFSLTVIVGLSPLKVLHKLRHEAATAQSSSKHKHVSLVLCLLTCFSGGVFL 64

Query: 259 STTFMHVMPEVQENIENLQARNILQEFDFSLTPLLTCCGFFIMYLIEELVHIYI 420
           +T F+H+ PE++EN+E L   +  +  D+ +  LL+C GFF+++ +EE+V + I
Sbjct: 65  ATCFLHLFPELRENLETLDTVHNFR-IDYPVGELLSCLGFFLIFFLEEVVIMII 117


>U42437-4|AAA83498.2|  349|Caenorhabditis elegans Hypothetical
           protein F30B5.7 protein.
          Length = 349

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 4/142 (2%)
 Frame = +1

Query: 112 LFCASMICGLIPQIIARKFRWLSVEDAGTFKSTNRVVMTLLSFGGGVLLSTTFMHVMPEV 291
           +F  +   G++P  I R  +    E    + S       L  F GGV L+T F+ ++P +
Sbjct: 15  MFVVTAAIGIVPLFIVRVMKRSQNESEQGYLSY------LTCFAGGVFLATCFLDIIPHI 68

Query: 292 QENIENLQARNILQEFDFSLTPLLTCCGFFIMYLIEEL-VHIYIHHREKNNGQTDLLVRN 468
            E  E L     L  + F+    +TCCGFF +Y IEE    ++ + ++  +G +  L + 
Sbjct: 69  NEGYEELMETYDLN-WHFAYPQFVTCCGFFFIYFIEEFTTFVFGNGQQPGHGHSHSLNKG 127

Query: 469 LSVRKS---RCTEGHSNEAKNS 525
             +  +   R + G   E K S
Sbjct: 128 NKITTTSDGRLSPGMPKERKGS 149


>Z70306-5|CAO82011.1|  337|Caenorhabditis elegans Hypothetical
           protein C06G8.3c protein.
          Length = 337

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 2/114 (1%)
 Frame = +1

Query: 70  TDGIVLA-KGISMVVLFCASMICGLIPQIIARKFRWLSVEDAGTFKSTNRVVMTLLSFGG 246
           T+G  LA + +  +VL   + + G  P ++        ++  G  ++ +  +  L  F G
Sbjct: 2   TEGGYLALQSVLALVLLVVTAVAGSAPLLLLT-----FLKKKGKDQNDSGWLSYLSCFSG 56

Query: 247 GVLLSTTFMHVMPEVQENI-ENLQARNILQEFDFSLTPLLTCCGFFIMYLIEEL 405
           GV ++T F+ VMP VQ+   E L+  N+  EF   +  L  C GFF +YLIEE+
Sbjct: 57  GVFMATCFLDVMPHVQQTYGEILETYNV--EFRLPMNQLFICVGFFFVYLIEEI 108


>Z70306-4|CAH04694.1|  363|Caenorhabditis elegans Hypothetical
           protein C06G8.3b protein.
          Length = 363

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 2/114 (1%)
 Frame = +1

Query: 70  TDGIVLA-KGISMVVLFCASMICGLIPQIIARKFRWLSVEDAGTFKSTNRVVMTLLSFGG 246
           T+G  LA + +  +VL   + + G  P ++        ++  G  ++ +  +  L  F G
Sbjct: 2   TEGGYLALQSVLALVLLVVTAVAGSAPLLLLT-----FLKKKGKDQNDSGWLSYLSCFSG 56

Query: 247 GVLLSTTFMHVMPEVQENI-ENLQARNILQEFDFSLTPLLTCCGFFIMYLIEEL 405
           GV ++T F+ VMP VQ+   E L+  N+  EF   +  L  C GFF +YLIEE+
Sbjct: 57  GVFMATCFLDVMPHVQQTYGEILETYNV--EFRLPMNQLFICVGFFFVYLIEEI 108


>AL032648-3|CAA21695.1|  319|Caenorhabditis elegans Hypothetical
           protein Y54G9A.4 protein.
          Length = 319

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 33/136 (24%), Positives = 66/136 (48%), Gaps = 1/136 (0%)
 Frame = +1

Query: 85  LAKGISMVVLFCASMICGLIPQIIARKFRWLSVEDAGTFKSTNRVVMTLLSFGGGVLLST 264
           L K I + V+   ++I GL+P    +   +L+   +   + ++ ++     F GGV LS 
Sbjct: 5   LLKWIMLGVMALMTIIFGLLP---IKVISYLNTTKSAIHQHSSLILSLFSCFAGGVFLSV 61

Query: 265 TFMHVMPEVQENIENLQARNILQEFDFSLTPLLTCCGFFIMYLIEELVHIYIHHREKNNG 444
            F+ ++P+  E  E++Q        D+    L+   GFF +YL EEL  +  +    ++ 
Sbjct: 62  CFLDMLPDCLEAWESVQTDTNYTS-DYPFVQLIALLGFFFVYLTEELSSVICNVGHGHSH 120

Query: 445 QTD-LLVRNLSVRKSR 489
             D ++  N++  ++R
Sbjct: 121 SNDPIMESNVTFPRAR 136


>AF100659-8|AAC68966.1|  688|Caenorhabditis elegans Hypothetical
           protein F58E2.3 protein.
          Length = 688

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 230 CSPSEAVCCSQRLSCTSCLKSKRTLKICKRGTFSKNLISH 349
           C     V  S+ L CTS   S+ ++K+   G   KN++SH
Sbjct: 296 CEELRNVQSSKELECTSLCTSELSIKVLHNGLLMKNILSH 335


>Z50863-1|CAA90736.3|  353|Caenorhabditis elegans Hypothetical
           protein C14H10.1 protein.
          Length = 353

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 229 LLSFGGGVLLSTTFMHVMPEVQENIEN 309
           LL F  G LL+  F+H++PE  E+ EN
Sbjct: 150 LLGFAIGSLLADVFLHLLPEAYESNEN 176


>U28944-12|AAA68371.2|  363|Caenorhabditis elegans Hypothetical
           protein C18A3.2 protein.
          Length = 363

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = +1

Query: 247 GVLLSTTFMHVMPEVQENIENLQA-RNILQEFDF-SLTPLLTCCGFFIMYLIEELVH 411
           GV ++T F+ ++P V+    +L+  + I+  + +   T  L   GF I+ + E+++H
Sbjct: 50  GVFIATCFLGLVPHVRHQEMHLRGNQTIVDSYGWIPSTDQLVIIGFLIILITEQIIH 106


>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
           on autosome protein2 protein.
          Length = 1758

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -3

Query: 285 RHDVHESR*EQHTASEGEQSHHHPVRRLERPRVFYGEPSKLSRDDL 148
           +H +H    +QH AS   Q  HHP R    P   Y +PS  +   L
Sbjct: 92  QHQLHHQN-QQHQASTSTQQFHHPQR---PPPPQYDQPSSSTGSSL 133


>AC024808-3|AAK29925.1|  183|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.6 protein.
          Length = 183

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 483 LAHAQISDQ*ICLSIILLSVMNVYVHQFFYQI 388
           LA  Q+S + +C+ I+L  V NV+VH  +Y +
Sbjct: 46  LASFQVSIE-VCVRILLSLVHNVFVHASYYNV 76


>Z96047-6|CAB09416.1|  922|Caenorhabditis elegans Hypothetical
           protein DY3.7 protein.
          Length = 922

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 230 CSPSEAVCCSQRLSCTSCLKSKRTLKICKRGTFSKNL 340
           CSPS+  CC+     T  L  K   KIC++ +   NL
Sbjct: 564 CSPSQGYCCNPD---TCSLHGKNEEKICRQESECSNL 597


>AL021472-4|CAA16301.1|  149|Caenorhabditis elegans Hypothetical
           protein Y17D7B.4 protein.
          Length = 149

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 233 SPSEAVCCSQRLSCTSCLKSKRTLKICKRGT 325
           +PS+AVC    + C + ++   T   CK GT
Sbjct: 74  TPSQAVCNVSNVDCGTYVRGPETWSSCKLGT 104


>AF024614-1|AAB97161.1|  922|Caenorhabditis elegans ADAM 10 protein.
          Length = 922

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 230 CSPSEAVCCSQRLSCTSCLKSKRTLKICKRGTFSKNL 340
           CSPS+  CC+     T  L  K   KIC++ +   NL
Sbjct: 564 CSPSQGYCCNPD---TCSLHGKNEEKICRQESECSNL 597


>U41278-4|AAK31513.3|  928|Caenorhabditis elegans Hypothetical
           protein F33G12.5 protein.
          Length = 928

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +1

Query: 430 EKNNGQTDLLVRNLSVRKSR----CTEGHSNEAKNSTESGIES 546
           EK + Q+DL   N  + K R      E  +N+  NST SG+ S
Sbjct: 148 EKVSSQSDLRQANKQIEKLRHKLAAAENIANQMSNSTSSGLSS 190


>AF100670-2|AAN73857.3|  554|Caenorhabditis elegans Hypothetical
           protein M4.1 protein.
          Length = 554

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 262 TTFMHVMPEVQENIENLQARNILQEFDFS 348
           T  M  MPEVQEN   L+A ++ +  +FS
Sbjct: 470 TAAMATMPEVQENHGCLEASSLKETLEFS 498


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,174,966
Number of Sequences: 27780
Number of extensions: 349015
Number of successful extensions: 1066
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)