Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3775
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc...    27   3.0  
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr...    26   4.0  
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    25   7.0  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   9.2  

>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -2

Query: 447 YMLSPMTLTMI---KSFQVTNQLQACVCISDYENLIEGSQECCLIV 319
           YML  MTL  +    S    N L+AC+C+S  +  +  ++E  L V
Sbjct: 231 YMLDAMTLFDVFPTLSQDTYNVLRACLCVSPEKRSLAKTREAVLAV 276


>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 422

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -2

Query: 501 LPASITT*MTTRDLKLNFYMLSPMTLTMIKSFQVTNQLQACVCISD-YENLIEGSQE 334
           LP  +    +T   KLN + L+ MT        + N++Q C+  ++  EN ++ + E
Sbjct: 327 LPYEVNEFCSTNREKLNVHRLALMTFRDYMVLPIANRIQICIGRAESAENALDNAGE 383


>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 442 VVAYDINNDKKFSGY 398
           V+AYDIN DKK   Y
Sbjct: 171 VLAYDINPDKKLENY 185


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = +1

Query: 331 ALLASFYQIFVVTNAHACLQLVGNLKTFYHC 423
           A + +F +++V+ ++ AC+      +T +HC
Sbjct: 92  ATVYTFLEVYVIWSSTACINFFDIYQTNWHC 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,401,062
Number of Sequences: 5004
Number of extensions: 45238
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)