Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3774
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         28   1.3  
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    27   1.7  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    26   3.8  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.1  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    25   6.7  
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    25   8.8  

>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 352 LFVLSLFYTKV*VFYLSIKALRSLPGQLVFNNF 254
           +F L L +T++ +FYLS+  L   P +++ N F
Sbjct: 321 IFTLLLTFTQLTIFYLSLNCLIENPYRMLRNTF 353


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 241 LNYFTSSQELIIQCVRDEDGKNASPYMCDP 152
           L  F S+Q+  +  VR E  KN   Y+CDP
Sbjct: 32  LKSFYSTQDPALNEVRTEKLKNGVTYVCDP 61


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 195  EMKMVRTHHHTCATLIPNPRTELGPAMITRVP 100
            E  + R   H C  + PNP   +G +  TR P
Sbjct: 1229 ETNLFRQKLHECVPIAPNPPPIIGESKSTRKP 1260


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 396 ILFFL*CVPRRTDSFCLF 343
           ++FFL  VP+ T SFC+F
Sbjct: 261 LIFFLNLVPKPTVSFCVF 278


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/35 (28%), Positives = 14/35 (40%)
 Frame = -3

Query: 562 VNCNTTHYRANWVPGPPSRAAEPIWIIMILNYLWK 458
           V C + H   NW+          IW +M    +WK
Sbjct: 382 VRCLSVHVSGNWLASGGDDGVLRIWEVMTGRCVWK 416


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +1

Query: 307 NKRPKLLYKINLKQTKGIRPTGDTSKEKQNCYFYLIPS 420
           N +P + + +  + T+GI+   +++  +QN  F + PS
Sbjct: 139 NMQPNVSWNVLQEPTRGIKVPKESNNTQQNNQFVMEPS 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,383
Number of Sequences: 5004
Number of extensions: 56012
Number of successful extensions: 115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)