Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3774
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0079 + 18914668-18914753,18915123-18915338,18915829-189158...    30   1.3  
01_05_0490 + 22672241-22674679                                         29   2.3  
05_03_0057 - 7872771-7873326,7873432-7873786,7873892-7874103,787...    29   3.0  
03_05_0823 - 27970038-27970258,27970279-27970544,27970608-279706...    28   5.2  
12_02_0738 + 22669557-22669756,22669868-22669916,22670620-226706...    28   6.9  
01_06_0509 - 29921224-29924589                                         27   9.1  

>11_05_0079 +
           18914668-18914753,18915123-18915338,18915829-18915895,
           18916656-18916723,18916999-18917125,18918240-18918339,
           18918405-18918433,18918678-18918730,18919246-18919732
          Length = 410

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +1

Query: 283 DFVVP*SINKRPKLLYKINLKQTKGIRPTGDTSKEKQNCYFYLIPSIFI 429
           DF++P  +   P +L  +++    G      T  EK   Y YL P + I
Sbjct: 310 DFLLPTVVGCLPMILQNVSIVSLAGAAVASTTGSEKSRIYSYLFPVLGI 358


>01_05_0490 + 22672241-22674679
          Length = 812

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 187 DGKNASPYMCDPHTKPENRVRTCNDHPCPPR 95
           DG  +SP   D    P++ VRT N  P PPR
Sbjct: 576 DGHYSSP-SSDASASPDSTVRTTNPAPAPPR 605


>05_03_0057 -
           7872771-7873326,7873432-7873786,7873892-7874103,
           7875248-7875453
          Length = 442

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 241 LNYFTSSQELIIQCVRDEDGKNASPYMCDPHTKPENRV-RTCNDHPCPPR 95
           L  F ++ + ++ C     G N+S +  DP  K +N V +T +    PPR
Sbjct: 15  LTLFLATSDAVLNCSTTA-GNNSSTFTVDPRRKSQNNVYQTPSPSSSPPR 63


>03_05_0823 -
           27970038-27970258,27970279-27970544,27970608-27970657,
           27971272-27971538,27971633-27972001,27972373-27973278
          Length = 692

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 154 PHTKPENRVRTCNDHPCPPRLVAIILNIFILFFYCLNGW 38
           PHT P  R+R       PP + A+ + +  L  + +N W
Sbjct: 227 PHTSPLARIRPLAGRYVPPEVAAVRVPLLHLSNFQINDW 265


>12_02_0738 +
           22669557-22669756,22669868-22669916,22670620-22670657,
           22670977-22671058,22671146-22671195,22671381-22671847,
           22671992-22672155,22672242-22672448,22672554-22672710,
           22672858-22672965,22673161-22673234,22673364-22673521,
           22673728-22673788,22673858-22673965
          Length = 640

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 461 PQIIQDHNYPNRFSRSRGGARYPIRPIVSRI-TIHWPSFYNVVTGKT 598
           P  +  H+YP++        +  ++ ++S   TI WPSF  +V G T
Sbjct: 498 PNDVSTHDYPDQAPTPFPDWQQDLQRLMSSSDTIDWPSFERIVLGGT 544


>01_06_0509 - 29921224-29924589
          Length = 1121

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -2

Query: 611  WVPPGFSQSRRCKTTASEL*YDSL*GELGTG-PPLESG*TDLDN 483
            +VPP + QS RC T      Y  +  EL TG PP +S     DN
Sbjct: 976  YVPPEYYQSFRCTTKGDVYSYGVVLLELLTGKPPTDSADFGEDN 1019


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,501,660
Number of Sequences: 37544
Number of extensions: 357489
Number of successful extensions: 664
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)