Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3769
(559 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 255 3e-69
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 202 4e-53
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 116 2e-27
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 98 7e-22
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 50 2e-07
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 50 3e-07
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 46 4e-06
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 44 2e-05
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 44 2e-05
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 40 2e-04
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 39 4e-04
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 38 8e-04
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 38 0.001
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 37 0.002
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 37 0.002
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 37 0.002
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 34 0.016
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 33 0.022
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 33 0.028
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 33 0.028
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 30 0.27
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual 28 1.1
SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomy... 27 1.4
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 26 3.3
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 3.3
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 3.3
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 26 4.3
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa... 25 5.7
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||... 25 5.7
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|... 25 5.7
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc... 25 5.7
SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase |Schizosac... 25 7.5
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 25 7.5
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa... 25 7.5
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 25 7.5
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 25 7.5
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 25 7.5
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar... 25 7.5
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce... 25 10.0
SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M... 25 10.0
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 255 bits (625), Expect = 3e-69
Identities = 121/144 (84%), Positives = 130/144 (90%)
Frame = +1
Query: 28 MGNMFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 207
MG + LF+ LFGK+EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY+N
Sbjct: 1 MGLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRN 60
Query: 208 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELPDAV 387
ISFTVWDVGGQDKIRPLWRHYFQNTQG+IFVVDSNDRERI EA EEL RML+EDEL DA+
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDAL 120
Query: 388 LLIFANKQDLPNAMNAARDNRQTG 459
LL+FANKQDLPNAMNAA + G
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLG 144
Score = 76.6 bits (180), Expect = 2e-15
Identities = 32/37 (86%), Positives = 35/37 (94%)
Frame = +2
Query: 440 EITDKLGLHSLRNRNWYIQATCATFGDGLYQGLDWLS 550
EITDKLGLHSLR+R WYIQATCAT GDGLY+GL+WLS
Sbjct: 138 EITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLS 174
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 202 bits (492), Expect = 4e-53
Identities = 94/134 (70%), Positives = 109/134 (81%)
Frame = +1
Query: 40 FANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFT 219
F+ F LF KEMRILM+GLDAAGKTTILYKLKL + V TIPT+GFNVETV YKNI F
Sbjct: 9 FSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFN 68
Query: 220 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELPDAVLLIF 399
VWDVGGQDKIRPLWRHYF T+GLIFVVDS D RI EAR+EL R++S+ E+ D +LL+
Sbjct: 69 VWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVL 128
Query: 400 ANKQDLPNAMNAAR 441
ANKQDLP A++ A+
Sbjct: 129 ANKQDLPGALSPAQ 142
Score = 52.4 bits (120), Expect = 4e-08
Identities = 23/40 (57%), Positives = 29/40 (72%)
Frame = +2
Query: 440 EITDKLGLHSLRNRNWYIQATCATFGDGLYQGLDWLSQSA 559
+ITD L L L++R W +Q TCA GDGL +GL WLSQ+A
Sbjct: 142 QITDVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWLSQNA 181
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 116 bits (280), Expect = 2e-27
Identities = 54/123 (43%), Positives = 85/123 (69%), Gaps = 1/123 (0%)
Frame = +1
Query: 70 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDK 246
++E+R+L++GLD AGKTTIL K L E V + PT GF + T+E + + FT+WD+GGQ
Sbjct: 14 EREVRVLLLGLDNAGKTTIL-KCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKT 72
Query: 247 IRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELPDAVLLIFANKQDLPNA 426
+R W++YF++T+ +I+VVDS D R+ E R L +L E++L +L+ ANK D+ A
Sbjct: 73 LRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSGA 132
Query: 427 MNA 435
+++
Sbjct: 133 LSS 135
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 98.3 bits (234), Expect = 7e-22
Identities = 47/120 (39%), Positives = 71/120 (59%)
Frame = +1
Query: 73 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 252
K ++L +GLD AGKTT+L+ LK + PT+ E + N+ FT +D+GG + R
Sbjct: 19 KHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQAR 78
Query: 253 PLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELPDAVLLIFANKQDLPNAMN 432
LWR YF G++++VD D ER+ E++ EL +L+ +EL LI NK D P A++
Sbjct: 79 RLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVPFLILGNKIDAPGAIS 138
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 50.4 bits (115), Expect = 2e-07
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Frame = +1
Query: 82 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDK 246
++L++G GK+ +L + + I TIG F + T E K + +WD GQ++
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 247 IRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELPDAVLLIFANKQDL 417
R + Y++ G+I V D D++ ++ L + + L+ NK D+
Sbjct: 70 FRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQE-IDRYAVEGVNRLLVGNKSDM 125
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 49.6 bits (113), Expect = 3e-07
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Frame = +1
Query: 79 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 243
+++L++G GK+ +L + + I TIG F + T+E K I +WD GQ+
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Query: 244 KIRPLWRHYFQNTQGLIFVVDSNDRERIGEAR 339
+ R + Y++ G++ + D D++ R
Sbjct: 70 RFRTITTAYYRGAMGILLLYDVTDKKSFDNVR 101
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 46.0 bits (104), Expect = 4e-06
Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 5/137 (3%)
Frame = +1
Query: 82 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 246
+ +++G GK+ +L + E + + TIG T ++ K I +WD GQ++
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 247 IRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELPDAVLLIFANKQDLPNA 426
R + Y++ G + V D + L + L E + V+++ NK DL +
Sbjct: 72 YRAITSAYYRGAVGALIVYDITKQSSFDNVGRWL-KELREHADSNIVIMLVGNKTDLLHL 130
Query: 427 MNAARDNRQTGSAFAAQ 477
+ + Q AFAA+
Sbjct: 131 RAVSTEEAQ---AFAAE 144
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 43.6 bits (98), Expect = 2e-05
Identities = 26/132 (19%), Positives = 61/132 (46%), Gaps = 5/132 (3%)
Frame = +1
Query: 64 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWD 228
F ++ +++ +G + GKT+++ + + T TIG + + +E + + +WD
Sbjct: 7 FSLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 66
Query: 229 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELPDAVLLIFANK 408
GQ++ R L Y +++ I V D + E+ + + + D ++++ NK
Sbjct: 67 TAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNT-EKWIEDVRAERGDDVIIVLVGNK 125
Query: 409 QDLPNAMNAARD 444
DL + ++
Sbjct: 126 TDLADKRQVTQE 137
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 43.6 bits (98), Expect = 2e-05
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +1
Query: 196 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDE- 372
+ K I +WD GQ+K R + R+Y++ G + V D +++ EEL LS+
Sbjct: 58 QQKRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSF----EELSSWLSDIRA 113
Query: 373 -LPDAVLLIFA-NKQDLPN 423
P + ++ A +K DL N
Sbjct: 114 MAPSTICVVLAGSKSDLQN 132
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 39.9 bits (89), Expect = 2e-04
Identities = 31/139 (22%), Positives = 66/139 (47%), Gaps = 7/139 (5%)
Frame = +1
Query: 82 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETV---EYKNISFTVWDVGGQD 243
+++++G A GK++++ + + TIG F +T+ E ++ +WD GQ+
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 244 KIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELPDAVLLIFA-NKQDLP 420
+ + L Y++N I V D + +A+ + + + + P+ +++ A NK DL
Sbjct: 76 RYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKEL--QRQAPEGIVIALAGNKLDLA 133
Query: 421 NAMNAARDNRQTGSAFAAQ 477
A + A+AA+
Sbjct: 134 QERRAV--EKADAEAYAAE 150
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 39.1 bits (87), Expect = 4e-04
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Frame = +1
Query: 82 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQDK 246
++++VG GKTT + + GE I T+G V + + I F VWD GQ+K
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 247 IRPLWRHYFQNTQGLIFVVDSNDR 318
+ L Y+ Q I + D R
Sbjct: 71 LGGLRDGYYIQGQCGIIMFDVTSR 94
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 38.3 bits (85), Expect = 8e-04
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +1
Query: 169 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER--IGEARE 342
T+G + + ++ ++DVGGQ R W + F+N +IF V ND ++ A
Sbjct: 179 TLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLNDYDKKLYERAAP 238
Query: 343 ELMRMLSEDELPDAVL 390
E R++ L D+++
Sbjct: 239 ERNRLVESISLFDSII 254
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 37.9 bits (84), Expect = 0.001
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Frame = +1
Query: 163 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF----------VVDSN 312
I T G + ET + +DVGGQ R W H F+N L+F +V+ N
Sbjct: 219 IKTTGISEETFLLNRHHYRFFDVGGQRSERRKWIHCFENVTALLFLVSLAGYDQCLVEDN 278
Query: 313 DRERIGEAREELMRMLSEDELPDAVLLIFANKQDL 417
++ EA + + ++ +++F NK DL
Sbjct: 279 SGNQMQEALLLWDSICNSSWFSESAMILFLNKLDL 313
Score = 26.6 bits (56), Expect = 2.5
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +1
Query: 67 GKKEMRILMVGLDAAGKTTILYKLKL 144
G ++++L++G +GKTTI+ +++L
Sbjct: 71 GGNDIKVLLLGAGDSGKTTIMKQMRL 96
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 37.1 bits (82), Expect = 0.002
Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 10/127 (7%)
Frame = +1
Query: 67 GKKE--MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVW 225
GKK+ ++++++G GKT+I+ + + TIG + T V+ K ++ +W
Sbjct: 3 GKKKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLW 62
Query: 226 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERIGEAREELMRMLSEDELPDAVLLI 396
D GQ++ + L +++ + V D N+ E + R+E + S ++
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFIL 122
Query: 397 FANKQDL 417
NK D+
Sbjct: 123 LGNKVDV 129
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 37.1 bits (82), Expect = 0.002
Identities = 21/93 (22%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Frame = +1
Query: 79 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYKN--ISFTVWDVGGQD 243
+++ M+G + GKT+++ G + T+G N +T+ +N I+F++WD+GGQ
Sbjct: 11 IKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQR 70
Query: 244 KIRPLWRHYFQNTQGLIFVVDSNDRERIGEARE 342
+ + + ++F+ D + + + +E
Sbjct: 71 EFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKE 103
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 37.1 bits (82), Expect = 0.002
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 7/136 (5%)
Frame = +1
Query: 82 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET---VEYKNISFTVWDVGGQDKI 249
++++VG A GKT++L LG T +PT+ N + V+ K++ +WD GQ++
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEY 69
Query: 250 RPLWRHYFQNTQGLI--FVVDSNDR-ERIGEAREELMRMLSEDELPDAVLLIFANKQDLP 420
L + ++ F +DS D E + E + L P+ ++ K DL
Sbjct: 70 ERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINTL----CPNVPFILVGMKADLR 125
Query: 421 NAMNAARDNRQTGSAF 468
+ A + R+ F
Sbjct: 126 SDPVAIEEMRRRNQNF 141
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 33.9 bits (74), Expect = 0.016
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Frame = +1
Query: 82 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF------TVWDVGGQD 243
++L++G +GK+++ + + +G ++ +E+ ++ F +WD GGQ+
Sbjct: 4 KVLLMGRSGSGKSSMRSIVFSNYVAKDTRRLGATID-IEHSHVRFLGNLVLNLWDCGGQE 62
Query: 244 KIRPLW-----RHYFQNTQGLIFVVDSNDRE 321
+ H F+N Q LI+V D RE
Sbjct: 63 AFMENYLSAQRDHIFRNVQVLIYVFDVESRE 93
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 33.5 bits (73), Expect = 0.022
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Frame = +1
Query: 82 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VETVEY--KNISFTVWDVGGQ--- 240
++++VG A GKT +L G +PT+ N V VE ++I +WD GQ
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDY 67
Query: 241 DKIRPL 258
D++RPL
Sbjct: 68 DRLRPL 73
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 33.1 bits (72), Expect = 0.028
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Frame = +1
Query: 82 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET---VEYKNISFTVWDVGGQDKI 249
+I+++G AAGKT++L G PTI N V+ +I ++WD GQ++
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEY 74
Query: 250 RPLWRHYFQNTQGLI--FVVDSND 315
L + +T ++ F VDS D
Sbjct: 75 DQLRSLSYSDTHVIMICFAVDSRD 98
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 33.1 bits (72), Expect = 0.028
Identities = 31/153 (20%), Positives = 68/153 (44%), Gaps = 8/153 (5%)
Frame = +1
Query: 79 MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWDVGGQD 243
++++++G GKT ++ + + TIG + T V+ K ++ +WD GQ+
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQE 68
Query: 244 KIRPLWRHYFQNTQGLIFVVDSNDR---ERIGEAREELMRMLSEDELPDAVLLIFANKQD 414
+ + L +++ + V + N+ + + R+E + S+DE +++ N+ D
Sbjct: 69 RFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIV-GNQID 127
Query: 415 LPNAMNAARDNRQTGSAFAAQP*LVHSSDMRHF 513
+ A +R + H S+M HF
Sbjct: 128 KDASKRAVSLHRALDYCKSK-----HGSNMIHF 155
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 29.9 bits (64), Expect = 0.27
Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 7/131 (5%)
Frame = +1
Query: 70 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 249
KK + ++G +GKT++ +L E TT+P+I N E V +K ++ V D+ G +
Sbjct: 35 KKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSIEPN-EAV-WKYGAWLV-DLPGHPRA 91
Query: 250 RPLWRHYFQ---NTQGLIFVVDS----NDRERIGEAREELMRMLSEDELPDAVLLIFANK 408
+ F N + ++FV++S D +G + + + +P LLI NK
Sbjct: 92 KRWITTKFSGNYNVKAVVFVLNSATIDRDVHEVGLMLFDTILKCRKHHVPH--LLIACNK 149
Query: 409 QDLPNAMNAAR 441
DL A A +
Sbjct: 150 FDLFTAQPAEK 160
>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 27.9 bits (59), Expect = 1.1
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = -3
Query: 194 TVSTLKPIVGIVVTISPNLSLYRIVVLPAASKPTINILISFLPKRPLNKFANIFPILNYY 15
T T++P V + ++S N +L VVL + + +IN+ L ++ FA +FPI Y
Sbjct: 191 TTETIRPHVRLHNSLSTNAALSASVVLASRLEKSINVFFFIL--FAVHWFA-LFPIFRKY 247
Query: 14 EYNF 3
+ F
Sbjct: 248 IHVF 251
>SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 27.5 bits (58), Expect = 1.4
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +1
Query: 64 FGKKEMRILMVG-LDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 228
F K+ RIL VG L + + K GE+ +P +GF ++++ +N FT+++
Sbjct: 237 FLKEAYRILKVGGLLWVAEIKSRFSDKSGEVFAKELPKLGFETKSIQLQNKMFTLFE 293
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 26.2 bits (55), Expect = 3.3
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 85 ILMVGLDAAGKTTILYKLKL 144
I+MVGL +GKTT KL L
Sbjct: 104 IMMVGLQGSGKTTTCSKLAL 123
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.2 bits (55), Expect = 3.3
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +1
Query: 73 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI 174
KE+R+++ G GK++++ L + VT+IP +
Sbjct: 2 KEVRVVICGDQGVGKSSLISALIQEDNVTSIPKV 35
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 3.3
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 49 LFKGLFGKKEMRILMVGLDAAGKTTI 126
L K ++GK+ + I+ +G AGK+T+
Sbjct: 229 LLKDMYGKEHVNIVFIGHVDAGKSTL 254
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 25.8 bits (54), Expect = 4.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 264 PPQWSDFVLASNIPHSKTNVFVFY 193
PP+ SDF++ S H + N F F+
Sbjct: 257 PPEVSDFLIKSFYGHVQANFFFFH 280
>SPCC553.09c |spb70|pol12|DNA polymerase alpha
B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 5.7
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +1
Query: 31 GNMFANLFKGLFGKKEMRILMVG--LDAAGKTTI-LYKLKLGEIVTTIPTI 174
GN+FA L + ++ L G L+ + + + LKLGE + T+P I
Sbjct: 456 GNLFARLVSHVLHQRHFYPLFPGGSLEKCNPSNLDIAHLKLGEFLNTMPDI 506
>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 356
Score = 25.4 bits (53), Expect = 5.7
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -3
Query: 254 GLILSWPPTSHTVKLMFLYSTVSTLKPIVGIVVTISPNLSL 132
G++++ S MFL T+ST KPIV +V + P+ ++
Sbjct: 119 GIVITHGTDSLEETAMFLDLTISTAKPIV-VVGAMRPSTAI 158
>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 25.4 bits (53), Expect = 5.7
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -3
Query: 254 GLILSWPPTSHTVKLMFLYSTVSTLKPIVGIVVTISPNLSL 132
G++++ S MFL T+ST KPIV +V + P+ ++
Sbjct: 119 GIVITHGTDSLEETAMFLDLTISTAKPIV-VVGAMRPSTAI 158
>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 465
Score = 25.4 bits (53), Expect = 5.7
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 259 WRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELPDAVLLI 396
W H++ NTQ FV D ND ++ R+L + + P+A++ +
Sbjct: 17 WTHFW-NTQESYFVYDPNDHAKVNVNTN--FRVLKKRD-PEAIVTV 58
>SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 205
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 461 LHSLRNRNWYIQATCATFGDGLYQGLDWLS 550
L SL + + I +TF GL+ GL +LS
Sbjct: 175 LFSLEKKGFAIDVRLSTFALGLHAGLKYLS 204
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 70 KKEMRILMVGLDAAGKTTILYKL 138
KK I++VG+ +GKTT + +L
Sbjct: 6 KKPCAIIVVGMAGSGKTTFMQQL 28
>SPAC2G11.13 |atg22||autophagy associated protein Atg22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/20 (55%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = -3
Query: 257 SGLILSWPPTSHTV-KLMFL 201
SG+ILSW P+S + K++FL
Sbjct: 128 SGIILSWSPSSFLLGKIVFL 147
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 301 VDSNDRERIGEAREELMRMLSEDE 372
+DS++ E I +A+ E+ LSE+E
Sbjct: 430 IDSDEEETIDDAKSEMFVDLSEEE 453
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +1
Query: 70 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 177
KK++ + ++G AGK++I+ L+ ++ P G
Sbjct: 308 KKQISVGLIGFPNAGKSSIINTLRKKKVCNVAPIPG 343
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +1
Query: 151 IVTTIPTIGFNVETVEYKNISFTVW 225
I T P F+++ EY N+ VW
Sbjct: 237 IYFTFPVNSFSIDGCEYNNVKALVW 261
>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 25.0 bits (52), Expect = 7.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 437 PEITDKLGLHSLRNRNWYIQATCATFGDGLYQGLDW 544
P+ITDK ++SL ++ GD L G DW
Sbjct: 127 PDITDKETIYSLGKMSYNAYQKIPFDGDWLDLGPDW 162
>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 388
Score = 24.6 bits (51), Expect = 10.0
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +1
Query: 205 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSE 366
NIS + G+ + R +W+++ + S ++ +I E + EL R E
Sbjct: 296 NISVAPIEEQGEYESRRVWKNFAVALDAGDYAAASQEKSKIEEGQRELRRQEEE 349
>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 360
Score = 24.6 bits (51), Expect = 10.0
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -3
Query: 254 GLILSWPPTSHTVKLMFLYSTVSTLKPIVGIVVTISPNLSL 132
G++++ S MFL TV+T KPIV +V + P+ ++
Sbjct: 122 GIVVTHGTDSLEETAMFLDMTVNTTKPIV-VVGAMRPSTAI 161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,523,647
Number of Sequences: 5004
Number of extensions: 54208
Number of successful extensions: 227
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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